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SEEK ID: https://fairdomhub.org/investigations/438

Projects: IMPAcTB

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Creators and Submitter

Creator

Dikshant Pradhan

Submitter

Dikshant Pradhan

Activity

Views: 415

Created: 14th Jan 2021 at 16:10

Last updated: 18th Oct 2021 at 16:05

Related items

People (1)
Programmes (1)
Projects (1)
Studies (6+2)
Assays (25+2)
Data files (51)
SOPs (30)

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Dikshant Pradhan

Projects: IMPAcTB, MIT SRP

Institutions: Massachusetts Institute of Technology

Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology

Advanced Programmes list for this Investigation with search and filtering ...

IMPAcTB

No description specified

Projects: IMPAcTB

Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis

Advanced Projects list for this Investigation with search and filtering ...

IMPAcTB

No description specified

Programme: IMPAcTB

Public web page: Not specified

Organisms: Not specified

Advanced Studies list for this Investigation with search and filtering ...

T cell signatures of bacterial control among M. tuberculosis 'resisters'

IMPAcTB

All creators

Charles Demurjian

Meng Sun*, Jolie M. Phan*, Nathan S. Kieswetter, Krystle K.Q. Yu, Malisa T. Smith, Huang Huang, Sanjana Gupta, Gerlinde Obermoser, Holden Terry Maecker, Akshaya Krishnan, Neha Gupta, Mary Rieck, Peter Acs, Mustafa Ghanizada, Shin-Heng Chiou, Purvesh Khatri, W. Henry Boom, Thomas R. Hawn, Catherine M. Stein, Harriet Mayanja-Kizza, Mark M. Davis*, Chetan Seshadri*

Abstract: A subset of individuals with a high probability of exposure to M. tuberculosis (M.tb) ...

Submitter: Charles Demurjian

Investigation: IMPAcTB

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Patient Visit - Metadata, Tissue Collection - Metadata

Snapshots: No snapshots

Created: 8th May 2023 at 22:12, Last updated: 17th May 2023 at 22:46

Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection

IMPAcTB

All creators

Dikshant Pradhan

Thiel BA, Worodria W, Nalukwago S, Nsereko M, Sanyu I, Rejani L, Zawedde J, Canaday DH, Stein CM, Chervenak KA, Malone LL, Kiyemba R, Silver RF, Johnson JL, Mayanja-Kizza H, Boom WH. Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection. PLoS One. 2021 Apr 9;16(4):e0249477. doi: 10.1371/journal.pone.0249477. PMID: 33836031; PMCID: PMC8034721.

Abstract: ...

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked, Patient Visit – Metadata, Tissue Collection - Metadata

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.study.872.1

Created: 18th Oct 2021 at 16:01, Last updated: 15th May 2023 at 22:35

Fc-FcγR interactions shift alveolar macrophage metabolism to promote Mycobacterium tuberculosis restriction in mice

IMPAcTB

All creators

Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Tissue Extraction – Metadata

Snapshots: Snapshot 1, Snapshot 2

Created: 9th Mar 2022 at 19:59, Last updated: 12th Apr 2023 at 22:20

Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control

IMPAcTB

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Dikshant Pradhan

Charles Demurjian

Hannah P.Gideon, Travis K.Hughes, Constantine N.Tzouanas, Marc H.WadsworthII, Ang AndyTu, Todd M.Gierahn, Joshua M.Peters, Forrest F.Hopkins, Jun-RongWei, Conner Kummerlowe, Nicole L.Grant, Kievershen Nargan, Jia YaoPhuah, H. JacobBorish, Pauline Maiello, Alexander G.White, Caylin G.Winchell, Sarah K.Nyquist, Sharie Keanne C.Ganchua, Amy Myers, Kush V.Patel, Cassaundra L.Ameel, Catherine T.Cochran, Samira Ibrahim, Jaime A.Tomko, Lonnie JamesFrye, Jacob M.Rosenberg, Angela Shih, Michael Chao, Edwin ...

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Immunohistochemistry – Data Linked, Library Creation – Metadata, NHP Necropsy – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing – Data Linked

Snapshots: Snapshot 1

Created: 20th May 2022 at 19:42, Last updated: 20th Mar 2023 at 21:57

Fc-engineered antibodies leverage neutrophils to drive control of Mycobacterium tuberculosis

IMPAcTB

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Jake Schissel

Edward B. Irvine, Joshua M. Peters, Richard Lu, Patricia S. Grace, Jaimie Sixsmith, Aaron Wallace, Matthew Schneider, Sally Shin, Wiktor Karpinski, Jeff C. Hsiao, Esther van Woudenbergh, Arturo Casadevall, Bryan D. Bryson, Lisa Cavacini, View ORCID ProfileGalit Alter, Sarah M. Fortune doi: https://doi.org/10.1101/2022.05.01.490220

Novel vaccination and therapeutic strategies are urgently needed to mitigate the tuberculosis (TB) epidemic. While extensive efforts have focused on potentiating ...

Submitter: Jake Schissel

Investigation: IMPAcTB

Assays: No Assays

Snapshots: No snapshots

Created: 14th Sep 2022 at 16:03, Last updated: 14th Sep 2022 at 16:19

Robust IgM responses following intravenous vaccination with Bacille Calmette-Guerin associate with prevention of Mycobacterium tuberculosis infection in macaques. Irvine et al (2021)

IMPAcTB

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Dikshant Pradhan

Development of an effective tuberculosis (TB) vaccine has suffered from an incomplete understanding of the correlates of protection against Mycobacterium tuberculosis (Mtb). Intravenous (i.v.) vaccination with Bacille Calmette–Guérin (BCG) provides nearly complete protection against TB in rhesus macaques, but the antibody response it elicits remains incompletely defined. Here we show that i.v. BCG drives superior antibody responses in the plasma and the lungs of rhesus macaques compared to ...

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Anti-Microbial Assay – Metadata, Functional Assay – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Tissue Collection – Metadata

Snapshots: Snapshot 1

Created: 25th Oct 2021 at 02:43, Last updated: 2nd Sep 2022 at 19:03

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Showing 20 out of a possible 25 items Advanced Assays list for this Investigation with search and filtering ...

NHP Tissue Collection – Metadata

IMPAcTB

All creators

Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: No SOPs

Data files: CEX-samples-publish2022-01-28_00-10.xlsx, NHP-samples-publish2022-01-28_00-20.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:52, Last updated: 21st Apr 2022 at 20:16

Luminex Assay – Metadata

IMPAcTB

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Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_NHP-FcR-Luminex-Protocol-EI.doc, P.ALT-211020-V1_NHP-Isotype-Luminex-Protocol-EI..., P.ALT-211203-V1_BCG_study_EI_luminex_panel.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:54, Last updated: 21st Apr 2022 at 20:16

Luminex Data Processing – Data Attached

IMPAcTB

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Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-220127-V1_EI-IV_BCG_PLS-DA_Statistics.docx

Data files: A.LMX-samples-publish2022-01-27_23-59.xlsx, D.FILE-220127ALT-1_Data_EI_IV_BCG_IgM_SystemsSe..., D.FILE-samples-publish2022-01-28_00-04.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:54, Last updated: 21st Apr 2022 at 20:17

Anti-Microbial Assay – Metadata

IMPAcTB

All creators

Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211119-V1_Mac-Live-Dead-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Opsonize-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Protocol-EI.docx

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 21:59, Last updated: 21st Apr 2022 at 20:18

Functional Assay – Metadata

IMPAcTB

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Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_LAM-ADCP-Protocol-EI.doc, P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc, P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 22:07, Last updated: 21st Apr 2022 at 20:18

Tissue Extraction – Metadata

IMPAcTB

All creators

Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: MUS-samples-publish2022-03-15_01-19.xlsx, TIS-samples-publish2022-03-15_01-23.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 18:10, Last updated: 21st Apr 2022 at 19:47

Single Cell Sequencing – Data Linked

IMPAcTB

All creators

Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: D.SEQ-samples-publish2022-03-25_04-01.xlsx

Snapshots: No snapshots

Created: 24th Mar 2022 at 20:56, Last updated: 21st Apr 2022 at 19:50

Single Cell Sequencing Analysis – Data Linked

IMPAcTB

All creators

Dikshant Pradhan

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: A.SCCLUST-samples-publish2022-04-08_05-10.xlsx, A.SCEXPR-samples-publish2022-04-08_05-07.xlsx

Snapshots: No snapshots

Created: 7th Apr 2022 at 23:03, Last updated: 21st Apr 2022 at 19:48

Patient Visit – Metadata

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Mtb-Infection.rtf, P.FLY-220823-V1_P---NHP_housing.docx, P.FLY-220823-V1_P---Necropsy.docx, P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: NHP-samples-publish2022-09-28_17-30.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:01, Last updated: 3rd Nov 2022 at 17:00

NHP Necropsy – Metadata

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Bacteria-Burden.docx, P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf, P.FLY-220823-V1_P---Necropsy.docx

Data files: PAV-samples-publish2022-11-3_15-09.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:03, Last updated: 3rd Nov 2022 at 17:02

Library Creation – Metadata

IMPAcTB

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Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: DNA-samples-publish2022-10-18_00-56.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:04, Last updated: 25th Oct 2022 at 16:28

Single Cell Sequencing – Data Linked

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: D.SEQ-samples-publish2022-10-25_19-32.xlsx, DNA-samples-publish2022-10-18_00-56.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:06, Last updated: 25th Oct 2022 at 17:32

Single Cell Expression Matrix Analysis – Data Linked

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: A.SCXP-samples-publish2022-10-25_21-23.xlsx, D.SEQ-samples-publish2022-10-25_19-32.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:07, Last updated: 25th Oct 2022 at 19:15

Single Cell Clustering Analysis – Data Linked

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220824-V1_P---Clustering.docx

Data files: A.SCCL-samples-publish2022-10-28_13-03.xlsx, A.SCXP-samples-publish2022-10-25_21-23.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:07, Last updated: 28th Oct 2022 at 15:09

Immunohistochemistry – Data Linked

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220824-V1_P---Immunohistochemistry-Analys...

Data files: AB-samples-publish2022-10-28_14-18.xlsx, ABP-samples-publish2022-10-28_14-25.xlsx, D.IMG-samples-publish2022-10-28_14-40.xlsx, samples-publish2023-03-21_22-232.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:08, Last updated: 22nd Mar 2023 at 04:40

PET-CT Scan – Data Linked

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: D.IMG-samples-publish2022-10-28_13-10.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:09, Last updated: 3rd Nov 2022 at 17:10

PET-CT Scan Analysis – Data Linked

IMPAcTB

All creators

Jake Schissel

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: A.CTSC-samples-publish2022-10-28_13-14.xlsx, D.IMG-samples-publish2022-10-28_13-10.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:12, Last updated: 28th Oct 2022 at 15:23

Patient Visit - Metadata

IMPAcTB

All creators

Charles Demurjian

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: T cell signatures of bacterial control among M....

Organisms: No organisms

SOPs: P.BOO-230324-V1_KC_Protocol

Data files: PAT-samples-publish2023-05-17_13-17.xlsx, PAV-samples-publish2023-05-17_13-27.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 22:19, Last updated: 17th May 2023 at 22:46

Tissue Collection - Metadata

IMPAcTB

All creators

Charles Demurjian

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: T cell signatures of bacterial control among M....

Organisms: No organisms

SOPs: P.BOO-230324-V1_KC_Protocol

Data files: PAV-samples-publish2023-05-17_13-27.xlsx, TIS-samples-publish2023-05-17_15-05.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 22:19, Last updated: 17th May 2023 at 22:46

Flow Cytometry - Data Linked

IMPAcTB

All creators

Charles Demurjian

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: T cell signatures of bacterial control among M....

Organisms: No organisms

SOPs: P.SES-230405-V1_JP_Flow_Protocol.docx

Data files: AB-samples-publish2023-05-17_15-29.xlsx, ABP-samples-publish2023-05-17_15-30.xlsx, D.FCS-samples-publish2023-05-17_15-19.xlsx, D.FLOW-samples-publish2023-05-17_15-16.xlsx, TIS-samples-publish2023-05-17_15-05.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 22:23, Last updated: 17th May 2023 at 22:46

2 hidden items

Showing 20 out of a possible 51 items Advanced Data files list for this Investigation with search and filtering ...

D.FCS-samples-publish2023-05-19_15-43.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry – Data Linked

Download

Created: 19th May 2023 at 22:44, Last updated: 19th May 2023 at 22:46

Views: 84, Downloads: 2

D.FLOW-samples-publish2023-05-19_15-39.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked

Download

Created: 19th May 2023 at 22:41, Last updated: 19th May 2023 at 22:45

Views: 80, Downloads: 2

D.FCS-samples-publish2023-05-17_15-19.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked

Download

Created: 17th May 2023 at 22:26, Last updated: 17th May 2023 at 22:47

Views: 41, Downloads: 1

AB-samples-publish2023-05-17_15-29.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked

Download

Created: 17th May 2023 at 22:31, Last updated: 17th May 2023 at 22:47

Views: 62, Downloads: 2

ABP-samples-publish2023-05-17_15-30.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked

Download

Created: 17th May 2023 at 22:32, Last updated: 17th May 2023 at 22:47

Views: 75, Downloads: 2

A.FLOW-samples-publish2023-05-17_15-39.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry Analysis - Data Linked

Download

Created: 17th May 2023 at 22:42, Last updated: 17th May 2023 at 22:47

Views: 75, Downloads: 2

D.FLOW-samples-publish2023-05-17_15-16.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

Download

Created: 17th May 2023 at 22:24, Last updated: 17th May 2023 at 22:47

Views: 27, Downloads: 0

TIS-samples-publish2023-05-17_15-05.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked, Tissue Collection - Metadata

Download

Created: 17th May 2023 at 22:10, Last updated: 17th May 2023 at 22:46

Views: 28, Downloads: 0

PAT-samples-publish2023-05-17_13-17.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Patient Visit - Metadata

Download

Created: 17th May 2023 at 20:21, Last updated: 17th May 2023 at 22:46

Views: 31, Downloads: 0

PAV-samples-publish2023-05-17_13-27.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 17th May 2023 at 20:31, Last updated: 17th May 2023 at 22:46

Views: 24, Downloads: 0

ABP-samples-publish2023-03-31_14-43.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry – Data Linked

Download

Created: 31st Mar 2023 at 21:46, Last updated: 31st Mar 2023 at 22:02

Views: 87, Downloads: 0

A.FLOW-samples-publish2023-03-31_14-52.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry Processing – Data Attached

Download

Created: 31st Mar 2023 at 21:58, Last updated: 31st Mar 2023 at 22:02

Views: 95, Downloads: 4

AB-samples-publish2023-03-30_20-15.xlsx

IMPAcTB

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Charles Demurjian

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry – Data Linked

Download

Created: 31st Mar 2023 at 03:38, Last updated: 31st Mar 2023 at 22:01

Views: 106, Downloads: 1

A.FLOW-flowcytometry_10.1371.journal.pone.0249477.xlsx

IMPAcTB

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Dikshant Pradhan

No description specified

Creator: Dikshant Pradhan

Submitter: Dikshant Pradhan

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry Processing – Data Attached

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TIS-samples-publish2023-03-27_16-27.xlsx

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Flow Cytometry – Data Linked, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:30, Last updated: 30th Mar 2023 at 00:45

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PAV-samples-publish2023-03-27_16-19.xlsx

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:24, Last updated: 30th Mar 2023 at 00:45

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PAT-samples-publish2023-03-27_16-07.xlsx

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata

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Created: 27th Mar 2023 at 23:15, Last updated: 30th Mar 2023 at 00:45

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samples-publish2023-03-21_22-232.xlsx

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Jake Schissel

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Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

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Created: 22nd Mar 2023 at 04:39, Last updated: 22nd Mar 2023 at 04:41

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PAV-samples-publish2022-11-3_15-09.xlsx

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Studies: Multimodal profiling of lung granulomas in maca...

Assays: NHP Necropsy – Metadata, PET-CT Scan – Data Linked, Patient Visit – Metadata

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Created: 3rd Nov 2022 at 16:34

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D.IMG-samples-publish2022-10-28_14-40.xlsx

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Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

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Created: 28th Oct 2022 at 16:41

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Showing 20 out of a possible 30 items Advanced SOPs list for this Investigation with search and filtering ...

P.SES-230405-V1_JP_Flow_Protocol.docx

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Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked

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Created: 17th May 2023 at 22:44, Last updated: 17th May 2023 at 22:47

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P.BOO-230324-V1_KC_Protocol

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Studies: T cell signatures of bacterial control among M....

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

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Created: 17th May 2023 at 22:46, Last updated: 17th May 2023 at 22:47

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P.BOO-230324-V1_KC_Protocol

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:38, Last updated: 30th Mar 2023 at 00:45

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P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protocol_vers1.0

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:35, Last updated: 30th Mar 2023 at 00:45

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P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol_vers2.0

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:37, Last updated: 30th Mar 2023 at 00:45

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P.BOO-230324-V1_2019_April_Bronchoscopy_Protocol_vers4.0

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Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:37, Last updated: 30th Mar 2023 at 00:45

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P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_vers4.0

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Assays: Patient Visit – Metadata, Tissue Collection - Metadata

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Created: 27th Mar 2023 at 23:38, Last updated: 30th Mar 2023 at 00:45

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P.FLY-220824-V1_P---Immunohistochemistry-Analysis.docx

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Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

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Created: 17th Oct 2022 at 21:00

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P.SHA-220824-V1_P---Clustering.docx

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Studies: Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Clustering Analysis – Data Linked

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Created: 17th Oct 2022 at 20:58

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P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

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Assays: Single Cell Expression Matrix Analysis – Data L...

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Created: 17th Oct 2022 at 20:56

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P.SHA-220819-V1_SeqWellHughes.et.al.Master.Protocol.pdf

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Assays: Library Creation – Metadata, Single Cell Sequencing – Data Linked

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Created: 17th Oct 2022 at 20:38

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P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as-of-Sept-18.docx

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Assays: Library Creation – Metadata

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Created: 17th Oct 2022 at 20:37

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P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf

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Assays: NHP Necropsy – Metadata

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Created: 11th Oct 2022 at 21:41

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P.FLY-220823-V1_P---Bacteria-Burden.docx

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Assays: NHP Necropsy – Metadata

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Created: 11th Oct 2022 at 21:41

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P.FLY-220823-V1_P---PET_CT_Imaging.docx

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Assays: PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata

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Created: 11th Oct 2022 at 21:19

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P.FLY-220823-V1_P---Necropsy.docx

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Assays: NHP Necropsy – Metadata, Patient Visit – Metadata

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Created: 11th Oct 2022 at 21:18

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P.FLY-220823-V1_P---Mtb-Infection.rtf

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Assays: Patient Visit – Metadata

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Created: 11th Oct 2022 at 21:16

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P.FLY-220823-V1_P---NHP_housing.docx

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Studies: Multimodal profiling of lung granulomas in maca...

Assays: Patient Visit – Metadata

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Created: 27th Sep 2022 at 16:53, Last updated: 28th Sep 2022 at 17:18

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P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc

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Dikshant Pradhan

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Studies: Robust IgM responses following intravenous vacc...

Assays: Functional Assay – Metadata

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Created: 27th Jan 2022 at 22:11

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P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc

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Dikshant Pradhan

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Studies: Robust IgM responses following intravenous vacc...

Assays: Functional Assay – Metadata

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Created: 27th Jan 2022 at 22:10

Views: 354, Downloads: 6