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Code for image analyses

SysMetEx

Archive contains python scripts for image analysis

Creators: Malte Herold, Antoine Buetti-Dinh

Submitter: Malte Herold

Investigations: Deep Neural Networks Outperform Human Expert’s ...

Studies: Deep Neural Networks Outperform Human Expert’s ...

Assays: Code for image analysis

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Created: 14th Mar 2019 at 08:56, Last updated: 14th Mar 2019 at 11:11

Images of mineral colonization

SysMetEx

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Images used for training and validation of deep learning algorithm to determine biofilm composition of mixed species biofilms on mineral grains

Creators: Malte Herold, Soeren Bellenberg, Antoine Buetti-Dinh

Submitter: Malte Herold

Investigations: Deep Neural Networks Outperform Human Expert’s ...

Studies: Deep Neural Networks Outperform Human Expert’s ...

Assays: Imaging of leaching cultures

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Created: 14th Mar 2019 at 10:26, Last updated: 14th Mar 2019 at 11:11

Data table with cell counts (combined both rounds of analysis)

just cell counts, the area of the grains is separate.

Creator: Antoine Buetti-Dinh

Submitter: Antoine Buetti-Dinh

DOI: 10.15490/fairdomhub.1.datafile.1435.1

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 26th Jul 2016 at 12:48, Last updated: 26th Jul 2016 at 12:48

second round analysis of large composite microscopy images

after shankra, saving the images that could not be analysed earlier. here they are simply treated by imagej change in brightness/contrast. the same can also be done with imagemagic.

Creator: Antoine Buetti-Dinh

Submitter: Antoine Buetti-Dinh

DOI: 10.15490/fairdomhub.1.datafile.1434.1

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 26th Jul 2016 at 12:45, Last updated: 26th Jul 2016 at 12:45

compositions_images_remove_quartz_20160715_analysed_20160719 (first round of analysis (30% good))

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Creator: Antoine Buetti-Dinh

Submitter: Antoine Buetti-Dinh

DOI: 10.15490/fairdomhub.1.datafile.1433.1

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

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Created: 20th Jul 2016 at 12:29, Last updated: 20th Jul 2016 at 12:35

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