- Programmes (1)
- Projects (1)
- Institutions (1)
- Assays (1)
- Data files (2+21)
- SOPs (2+3)
- Publications (1)
- Presentations (0+4)
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising ...
Submitter: Malte Herold
Assay type: Experimental Assay Type
Technology type: Confocal Laser Scanning Microscopy (CLSM)
Investigation: Deep Neural Networks Outperform Human Expert’s ...
Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type) (batch), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type) (batch), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM 9293 (wild-type / wild-type) (batch)
SOPs: No SOPs
Data files: Images of mineral colonization
Snapshots: No snapshots
Microscopy images of A.Caldus (A), L.ferriphilum (L), S.thermosulfidooxidans (S) biofilms on chalcopyrite particles. (individual,e.g. SXX or mixed, e.g. SAL, cultures)
Timepoints: Day1, Day3, Day7, Day14, Day21
Images used for training and validation of deep learning algorithm to determine biofilm composition of mixed species biofilms on mineral grains
Investigations: Deep Neural Networks Outperform Human Expert’s ...
Assays: Imaging of leaching cultures
SOP for bioleaching experiments carried out for microscopy analysis at UDE
SOP for extracting DNA, RNA and Proteins from the mineral pellet of a bioleaching culture using hot acidic phenol. Current draft.
Submitter: Malte Herold
Date Published: 1st Feb 2018
Publication Type: Not specified
Citation: Appl Environ Microbiol 84(3) : e02091-17