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SEEK ID: https://fairdomhub.org/assays/1021
Experimental Assay
Projects: SysMetEx
Investigation: SysMetEx - Dataset collection
Study: Biofilms on chalcopyrite grains
Assay type: Experimental Assay Type
Technology type: Microscopy
Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)
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Created: 6th May 2019 at 17:01
Last updated: 12th Feb 2020 at 13:42
Related items
Projects: SysMetEx
Institutions: University of Luxembourg
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising
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Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
The raw data generated in the scope of the SysMetEx project for RNAseq, proteomics, and imaging analysis.
The data was generated on single and mixed species cultures of A. Caldus, L.ferriphilum, and/or S.thermosulfidooxidans.
Raw RNA data is combined in an ENA umbrella study summarising all short read data generated in the project.
Raw proteomics data is provided for distinct conditions at the pride repository.
Imaging data is provided for distinct conditions at a zenodo repository.
Snapshots: Snapshot 1, Snapshot 2
Person responsible: Malte Herold
Snapshots: No snapshots
Investigation: SysMetEx - Dataset collection
Assays: Microscopy imaging, Proteomics rawdata, RNAseq rawdata
Submitter: Malte Herold
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Sulfobacillus thermosulfidooxidans
Genotypes: wild-type
Phenotypes: wild-type
Comment: Created again as "Sulfobacillus thermosulfidooxidans DSM 9293" seemed to be broken
Microscopy images of A.Caldus (A), L.ferriphilum (L), S.thermosulfidooxidans (S) biofilms on chalcopyrite particles. (individual,e.g. SXX or mixed, e.g. SAL, cultures)
Timepoints: Day1, Day3, Day7, Day14, Day21
Investigations: SysMetEx - Dataset collection
Studies: Biofilms on chalcopyrite grains
Assays: Microscopy imaging
SOP for bioleaching experiments carried out for microscopy analysis at UDE
Creators: Malte Herold, Soeren Bellenberg
Submitter: Malte Herold
Investigations: SysMetEx - Dataset collection
Studies: Biofilms on chalcopyrite grains
Assays: Microscopy imaging