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SEEK ID: https://fairdomhub.org/assays/1229
Modelling Analysis
Projects: SysMetEx
Investigation: SysMetEx - Dataset collection
Study: Supplemental Files
Biological problem addressed: Model Analysis Type
Organisms: No organisms
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Created: 23rd Jan 2020 at 12:13
Last updated: 23rd Jan 2020 at 13:14
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Projects: SysMetEx
Institutions: University of Luxembourg
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising
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Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
The raw data generated in the scope of the SysMetEx project for RNAseq, proteomics, and imaging analysis.
The data was generated on single and mixed species cultures of A. Caldus, L.ferriphilum, and/or S.thermosulfidooxidans.
Raw RNA data is combined in an ENA umbrella study summarising all short read data generated in the project.
Raw proteomics data is provided for distinct conditions at the pride repository.
Imaging data is provided for distinct conditions at a zenodo repository.
Snapshots: Snapshot 1, Snapshot 2
Supplemental files for the publication of the dataset collection.
Person responsible: Malte Herold
Snapshots: No snapshots
Investigation: SysMetEx - Dataset collection
Repository for code used in data analysis (mainly for RNAseq) and for generating summary tables and overviews.
Investigations: SysMetEx - Dataset collection
Studies: Supplemental Files
Assays: Links to code repositories
Files for the reference genomes utilized in the analysis are summarised in this repository.
Investigations: SysMetEx - Dataset collection
Studies: Supplemental Files
Assays: Links to code repositories