Supplemental Files
Supplemental files for the publication
SEEK ID: https://fairdomhub.org/assays/1228
Modelling Analysis
Projects: SysMetEx
Investigation: SysMetEx - Dataset collection
Study: Supplemental Files
Assay position:
Biological problem addressed: Model Analysis Type
Organisms: No organisms
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Created: 23rd Jan 2020 at 11:03
Last updated: 23rd Jan 2020 at 12:14
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Projects: SysMetEx
Institutions: University of Luxembourg
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising ...
Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
The raw data generated in the scope of the SysMetEx project for RNAseq, proteomics, and imaging analysis. The data was generated on single and mixed species cultures of A. Caldus, L.ferriphilum, and/or S.thermosulfidooxidans. Raw RNA data is combined in an ENA umbrella study summarising all short read data generated in the project. Raw proteomics data is provided for distinct conditions at the pride repository. Imaging data is provided for distinct conditions at a zenodo repository.
Submitter: Malte Herold
Studies: Biofilms on chalcopyrite grains, Continuous cultures, Planktonic cells, Supplemental Files
Assays: Links to code repositories, Microscopy imaging, Proteomics rawdata, Proteomics rawdata, Proteomics rawdata, RNAseq rawdata, RNAseq rawdata, RNAseq rawdata, Supplemental Files
Supplemental files for the publication of the dataset collection.
Submitter: Malte Herold
Investigation: SysMetEx - Dataset collection
Overview of the quality control for the RNAseq short read data after quality filtering of the reads
Overview for quality control of mapping statistics, after mapping processed reads to reference genomes
Overivew of RNAseq and proteomics samples with respective accessions to access the raw data on ENA or PRIDE respectively.
Parameters used in maxQuant analysis
Overview of the quality control for the RNAseq short read data before quality filtering of the reads
