Data files

• MNT-021_J-20-0152_CYP3A4 1/2000_Run 10_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_005 > Control
• MNT-022_J-20-0154_CYP3A4 1/2000_Run 10_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_005 > Control
• MNT-023_J-20-0156_CYP3A4 1/2000_Run 10_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_005 > Control
• MNT-024_J-20-0158_CYP3A4 1/2000_Run 10_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_005 > Control
• MNT-025_J-20-0160_CYP3A4 1/2000_Run 10_LLL(green), RML(red), ...

• MNT-021_J-20-0152_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
• MNT-022_J-20-0154_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
• MNT-023_J-20-0156_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
• MNT-024_J-20-0158_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
• MNT-025_J-20-0160_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
• MNT-026_J-20-0162_HE_LLL(green), RML(red), ...

For each drug and condition, there is one:

• Visualization of the marginals and the sampling traces
• The credibility intervals for the parameters with the median
• Visualization of the individual ensemble output predictions with boxplots of the underlying data

Furthermore all conditions of the ensemble output predictions for one drug are visulized in one plot.

One example of a ReStoRunT sheet.

This file is part of a tutorial for the Gesellschaft für Ökologie and the NFDI4Biodiversity.

The file describe the methodology of the used algorithm to calculate the sensitivities against knockout and over-expression perturbations. The sensitivity values were classified in macro values for every perturbation. The bitwise distances were calculated for each biomolecule in the same macro class

Summary of identified ribosomal proteins of P. cordatum.

Summary table of identified pigment binding proteins with relative shares in % and calculations of total amount of pigment binding proteins in the different data sets.

Complete list of differentially expressed proteins between sub-anatomical regions. Non significant results were filtered out.

Complete list of differentially expressed proteins between sub-anatomical regions. Non significant results were filtered out.

Batch sample publishing

Batch sample publishing

Batch sample publishing

Comparative flux balance analysis file. All values are given in mmol/g/h. Fluxes were optimized to maximize BIOMASS.

Uptake and growth rates, and biomass yields are compared in vivo and in silico.

The metano scenario file for aerobic growth on 3-Hydroxybenzoate.

The metano scenario file for anaerobic growth on 3-Hydroxybenzoate.

The metano scenario file for aerobic growth on 4HPP.

The metano scenario file for anaerobic growth on 4HPP.

The metano scenario file for aerobic growth on acetate.