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_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 10:36, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

Download

Created: 16th May 2022 at 10:36, Last updated: 6th Nov 2024 at 15:26

scripts/STAR_commands_ReadsToAs2.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:26

output/P_citri_alldata_RNAseq_logFC_padj_counts.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

Download

Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:26

output/P_citri_alldata_RNAseq_logFC_padj_counts.xlsx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

Download

Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_03_mapAs2ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_03_mapAs2ToGenome-STAR

Download

Created: 16th May 2022 at 10:36, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_tr2_IPS_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_02_assembly2-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_02_assembly2-IPS

Download

Created: 16th May 2022 at 11:58, Last updated: 6th Nov 2024 at 15:26

output/PcSpadesTRsofttoGenome_STARlong.Aligned.sorted2.out.matchAnnot.parsed.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_03_mapAs2ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_03_mapAs2ToGenome-STAR

Download

Created: 16th May 2022 at 11:58, Last updated: 6th Nov 2024 at 15:26

output/PcSpadesTRsofttoGenome_STARlong.Aligned.sorted2.out.matchAnnot.txt.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_03_mapAs2ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_03_mapAs2ToGenome-STAR

Download

Created: 16th May 2022 at 11:58, Last updated: 6th Nov 2024 at 15:26

scripts/STARlong_MatchAnnot_commands_mapAs2ToGenome.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_03_mapAs2ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_03_mapAs2ToGenome-STAR

Download

Created: 16th May 2022 at 12:04, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_02_assembly2-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_02_assembly2-IPS

Download

Created: 16th May 2022 at 10:36, Last updated: 6th Nov 2024 at 15:26

input/params.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_01_assembly2-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_01_assembly2-rnaSPAdes

Download

Created: 16th May 2022 at 11:57, Last updated: 6th Nov 2024 at 15:26

reports/preprocessing_log.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_01_assembly2-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_01_assembly2-rnaSPAdes

Download

Created: 16th May 2022 at 11:58, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_tr2_rnaSpades_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_01_assembly2-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_01_assembly2-rnaSPAdes

Download

Created: 16th May 2022 at 11:58, Last updated: 6th Nov 2024 at 15:26

output/soft_filtered_transcripts.pep.filtered.tsv.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_02_assembly2-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_02_assembly2-IPS

Download

Created: 16th May 2022 at 11:58, Last updated: 6th Nov 2024 at 15:26

_STUDY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _S_P4_Pcitri_tr2-files

Download

Created: 16th May 2022 at 10:28, Last updated: 6th Nov 2024 at 15:26

_ASSAY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_02_CDHIT-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_02_CDHIT-Bioinfo

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_01_assembly2-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_01_assembly2-rnaSPAdes

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

scripts/rename_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_01_renameFASTA-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_01_renameFASTA-Bioinfo

Download

Created: 16th May 2022 at 11:57, Last updated: 6th Nov 2024 at 15:26

scripts/CD-HIT-EST_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_02_CDHIT-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_02_CDHIT-Bioinfo

Download

Created: 16th May 2022 at 11:57, Last updated: 6th Nov 2024 at 15:26

output/AllPcitriTranscripts.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_03_CDHIT2-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_03_CDHIT2-Bioinfo

Download

Created: 23rd Jan 2023 at 14:37, Last updated: 6th Nov 2024 at 15:26

_STUDY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _S_P4_Pcitri_tr1tr2combo-files

Download

Created: 16th May 2022 at 10:28, Last updated: 6th Nov 2024 at 15:26

_ASSAY_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1tr2combo/_A_01_renameFASTA-Bioinfo/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1tr2combo

Assays: _A_01_renameFASTA-Bioinfo

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

output/PCA_PC1_top10genes.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

output/PCA_PC2_top10genes.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

output/Pcitri_tr1_counts_STAR_bothStr.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

_Assay_METADATA.TXT

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:26

scripts/Pcitri_assembly1_STAR_commands.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_08_mapReadsToAs1-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_08_mapReadsToAs1-STAR

Download

Created: 16th May 2022 at 11:50, Last updated: 6th Nov 2024 at 15:26

output/P_citri_alldata_RNAseq_logFC_padj_TMMcpm.txt

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

output/P_citri_alldata_RNAseq_logFC_padj_TMMcpm.xlsx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_09_As1_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_09_As1_tr_limmaDE-R

Download

Created: 16th May 2022 at 11:51, Last updated: 6th Nov 2024 at 15:26

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