Sample types
What is a Sample type?
UID (Text) *, Name (Text) *, Scientist (Text) *, SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text) , Mass (Real number) , MassUnits (Text) , Organ (Text) , OrganDetail (Text) , StorageSite (Text) , StorageLocation (Text) , StorageType (Text) , BALCollectedVolume (Real number) , BALCollectedVolumeUnits (Text) , BALInstilledVolume (Real number) , BALInstilledVolumeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , CellCount (Real number) , Notes (Text) , StudyID (Text) , SampleCollectionDate (Date) , Contact (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) *, Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Strain (Text) , StrainReference (Text) , Genotype (Text) , Phenotype (Text) , StorageType (Text) , StorageLocation (Text) , StorageSite (Text) , Source (Text) , SourceFacility (Text) , ParentM (Text) , ParentF (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Real number) , Treatment1Units (Text) , Treatment1Time (Real number) , Treatment1TimeUnits (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , Treatment2Reference (Text) , Treatment2Dose (Real number) , Treatment2Units (Text) , Treatment2Time (Real number) , Treatment2TimeUnits (Text) , SacrificeDate (Date) , Notes (Text) , Disease (Text) , DiseaseReference (Text) , DiseaseStage (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text) , QC_notes (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Checksum (Text) , Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Panel (Text) , Analyte (Text) , Instrument (Text)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , StorageLocation (Text) , StorageSite (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Type (Text) , TreatmentType (Text) , Treatment (Text) , TreatmentDose (Real number) , TreatmentDoseUnits (Text) , TreatmentTime (Real number) , TreatmentTimeUnits (Text) , Volume (Real number) , VolumeUnits (Text) , Concentration (Real number) , ConcentrationUnits (Text) , Note (Text) , CollectionTime (Real number) , CollectionTimeUnits (Text)
Not specified
UID (Text) *, Name (Text) *, ID (Text) , DateOfBirth (Date) , Sex (Text) , Species (Text) , Origin (Text) , SourceFacility (Text) , Notes (Text) , Contact (Text) , Scientist (Text) , CoScientist (Text) , Publish_uri (Text) , Treatment1 (Text) , Treatment1Type (Text) , Treatment1Route (Text) , Treatment1Date (Date) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Treatment2 (Text) , Treatment2Type (Text) , Treatment2Route (Text) , Treatment2Date (Date) , Treatment2Dose (Real number) , Treatment2DoseUnits (Text) , NecropsyDate (Date) , Cohort (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , ModelName (Text) , ModelType (Text) , ModelDescription (Text) , Domain (Text) , Lab (Text) , Scientist (Text) *, SourceCode (Text) , Parent (Text) , SampleCreationDate (Date) , Docker (Text) , Notes (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , Checksum_PrimaryData (Text) , Scientist (Text) , SampleCreationDate (Date) , Parent (Text) , Protocol (Text) , Software (Text)
Not specified
UID (Text) *, Name (Text) *, File_PrimaryData (Text) , Link_PrimaryData (Text) , SampleCreationDate (Date) , Scientist (Text) , CoScientist (Text) , Protocol (Text) , Lab (Text) , Phage (Text) , CellLine (Text) , Parent (Text) , PlaqueTiter (Text) , PlaqueTiterCount (Real number) , ColonyTiter (Text) , ColonyTiterCount (Real number) , TiterEfficiency (Real number) , Plate (Text) , MutationFreq (Real number)
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UID (Text) *, Name (Text) *, Scientist (Text) , Protocol (Text) , DateOfBirth (Date) , Sex (Text) , Genotype (Text) , StorageType (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Route (Text) , Protocol_Treatment1 (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Route (Text) , Protocol_Treatment2 (Text) , SacrificeDate (Date)
Not specified
UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Concentration (Real number) , ConcentrationUnits (Text)
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UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , Parent (Text) , QuantificationMethod (Text) , File_SearchEngineOutput (Text) , Link_SearchEngineOutput (Text)
Not specified
UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , SampleCreationDate (Date) , Protocol_Data (Text) , ExperimentType (Text) , ParentList (Text) , Instrument (Text) , Scientist (Text) , Labels (Text) , QCInstrument (Text) , QCUser (Text) , Calibration (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , ProteinSeqFile (Text)
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UID (Text) *, File_PrimaryData (Text) *, Link_PrimaryData (Text) , Scientist (Text) , Protocol (Text) , CreationDate (Date) , Parent (Text) , SlideStain (Text) , SlideStain2 (Text) , SlideAntibody (Text) , SlideAntibodyConcentration (Text) , Foci (Text) , NumFoci (Real number) , Instrument (Text) , ImageArea (Real number) , ObjectArea (Real number) , AreaUnits (Text) , Contact (Text)
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UID (Text) *, Name (Text) *, Scientist (Text) , SampleCreationDate (Date) , Protocol (Text) , Parent (Text) , Organ (Text) , OrganDetail (Text) , StorageType (Text)
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Concentrations of PAH metabolites in bile and PFAS parent compounds in liver
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gender (String) , PFOA (Real number) , PFNA (Real number) , PFTrDA (Real number) , PFOS (Real number) , 1-OH-Naphthalene (Real number) , 2-OH-Naphthalene (Real number) , 1-OH-Phenanthrene (Real number) , 1-OH-Pyrene (Real number)
Not specified
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , cyp1a (Real number) , acox1 (Real number)
Not specified
Measurement of tail intensities in the Comet Assay - used in in vivo 1
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Tail intensity (%) (Real number)
Not specified
Measurement of cholinesterase, ALAT and ASAT activities + cortisol and total protein levels - in vivo studies
Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (Text) , Cholinesterase (Real number) , Cortisol (Real number) , ASAT (Real number) , ALAT (Real number) , Protein, total (Real number)
Not specified
Template for chemical quantification of CPM and TCP in liver and bile.
Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (String) , Liver CPM (Real number) , Liver TCP (Real number) , Bile CPM (Real number) , Bile TCP (Real number)
Not specified
Template for biometrics for IV-nord experiment
Fish ID (Integer) *, Olsvik ID (Integer) , Date (Date) , Exposure (String) , Nominal dose (mg/kg) (Text) , Measured dose (mg/kg) (Real number) , Weight start (g) (Real number) , Weight end (g) (Real number) , Growth (Real number) , SGR (Real number) , Length (cm) (Real number) , Gender (F/M) (String) , Liver weight (g) (Real number) , Gonade weight (g) (Real number) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Gross pathology (Text)
Not specified
Template for EROD activity measured in exposure studies
Fish ID (Registered Sample - Biometrics in vivo-nord) *, Exposure (String) , EROD activity (String)
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Semi-quantitative measurement of Cyp1a protein amount using the ELISA methods. Cyp1a amount is expressed as absorbance values at 450 nm.
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Cyp1a (A450) (Real number)
Not specified
Concentration of vitellogenin measured in cod blood plasma - in vivo studies
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gender (String) , Vitellogenin ng/mL (Real number)
Not specified
Enzyme activity of glutathione S-transferase and catalase in in vivo exposure studies
Fish ID (Registered Sample - In vivo biometrics) *, Exposure (Text) , Gst activity nmol/min/mg (Real number) , Cat activity nmol/min/mg (Real number)
Not specified
Concentrations of vitellogenin in blood plasma measured in field studies
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Gender (String) , Vitellogenin mg/mL (Real number)
Not specified
TBARS assay: Measurement of oxidative stress
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , MDA nmol/mg (Real number)
Not specified
Gene expression data of cod liver including the genes cyp1a, cat, hsp70, gsta3b, fabp7, fasn, acly, and scd.
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , cyp1a (Real number) , cat (Real number) , hsp70 (Real number) , gsta3b (Real number) , fabp7 (Real number) , fasn (Real number) , acly (Real number) , scd (Real number)
Not specified
qPCR results using absolute quantification, genes involved in steroidogenic pathways
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , star (Real number) , cyp17 (Real number) , p450scc (Real number) , cyp19 (Real number) , 3βhsd (Real number) , 11βhsd (Real number) , 17βhsd (Real number) , 20βhsd (Real number)
Not specified
Concentrations of contaminants in cod liver
Fish ID (Registered Sample - Field study biometry data) *, Sample number (Integer) , Lipid% (Real number) , Station (Integer) *, PFHxA (Text) , PFHpA (Text) , PFOA (Text) , PFNA (Text) , PFDA (Text) , PFUdA (Text) , PFDoDA (Text) , PFTrDA (Text) , PFTeDA* (Text) , PFHxS* (Text) , PFOS (Text) , FOSA (Text) , N-MeFOSA* (Text) , N-EtFOSA* (Text) , N-EtFOSE* (Text) , Sum PFAS10 (Text) , BDE-28 (Text) , BDE-47 (Text) , BDE-100 (Text) , BDE-99 (Text) , BDE-154 (Text) , BDE-153 (Text) , BDE-183 (Text) , Sum7PBDE (Text) , HBCDD (Text) , HBB (Text) , α-HCH (Text) , β-HCH (Text) , γ-HCH (Text) , Sum HCH (Text) , p,p'-DDE (Text) , o,p'-DDD (Text) , p,p'-DDD (Text) , o,p'-DDT (Text) , p,p'-DDT (Text) , Sum DDTs (Text) , HCB (Text) , Oxyklordan (Text) , trans-Klordan (Text) , cis-Klordan (Text) , trans-Nonaklor (Text) , cis-Nonaklor (Text) , Sum chlordanes (Text) , Mirex (Text) , PCB-52 (Text) , PCB-47 (Text) , PCB-74 (Text) , PCB-66 (Text) , PCB-56 (Text) , PCB-101 (Text) , PCB-99 (Text) , PCB-87 (Text) , PCB-136 (Text) , PCB-110 (Text) , PCB-151 (Text) , PCB-149 (Text) , PCB-118 (Text) , PCB-114 (Text) , PCB-153 (Text) , PCB-105 (Text) , PCB-141 (Text) , PCB-137 (Text) , PCB-138 (Text) , PCB-187 (Text) , PCB-183 (Text) , PCB-128 (Text) , PCB-156 (Text) , PCB-157 (Text) , PCB-180 (Text) , PCB-170 (Text) , PCB-199 (Text) , PCB-196 (Text) , PCB-189 (Text) , PCB-194 (Text) , PCB-206 (Text) , PCB-209 (Text) , Sum 32PCBs (Text) , Sum7PCBs* (Text) , Li (Text) , Mg (Text) , Al (Text) , V (Text) , Cr (Text) , Fe (Text) , Co (Text) , Ni (Text) , Cu (Text) , Zn (Text) , As (Text) , Se (Text) , Mo (Text) , Ag (Text) , Cd (Text) , Hg (Text) , Pb (Text)
Not specified
