Sample types
What is a Sample type?
Template for relative protein expression of Cyp3a and MT in field studies
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Relative Cyp3a expression (Real number) , Relative Mt expression (Real number)
Not specified
Fish ID (Integer) *, Date start (Date) , Date sampling (Date) , Exposure compound (String) , Exposure dose (String) , Tank/group (Integer) , Exposure time (day) (Integer) , Weight (g) (Real number) , Length (cm) (Real number) , Gender (F/M) (String) , Liver weight (g) (Real number) , Gonade weight (g) (Real number) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Gross pathology (String)
Not specified
Concentrations of estradiol (E2) and testosterone (T) in cod plasma in field studies (groups defined by stations).
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Estradiol (pg/mL) (Real number) , Testosterone (pg/mL) (String)
Not specified
Template for in vivo biometrics data
Fish ID (Integer) *, Date (Date) , Exposure (String) *, Weight (g) (Real number) ( g ) , Length (cm) (String) ( cm ) , Gender (F/M) (String) , Liver weight (g) (Real number) ( g ) , Gonade weight (g) (Real number) ( g ) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Gross pathology (String)
Not specified
Measurements of Gst and Cat enzyme activity in field studies such as Kollevåg.
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) , Gst activity nmol/min/mg (Real number) , Cat activity nmol/min/mg (Real number)
Concentrations of PAH metabolites (1-OH-pyr, 1-OH-phen, 3-OH-BaP) in bile of fish at different stations
Fish ID (Registered Sample - Field study biometry data) *, Station (Integer) *, 1-OH-phen ng/g (Real number) , 1-OH-pyr ng/g (Real number) , 3-OH-BaP ng/g (Real number)
Not specified
Template for biometry data for field studies such as Kollevåg, Oslofjord etc.
Fish ID (Integer) *, Date (Date) , Station (Integer) *, Weight (g) (Real number) ( g ) , Length (cm) (Real number) ( cm ) , Gender (F/M) (String) *, Liver weight (g) (Real number) ( g ) , Gonade weight (g) (Real number) ( g ) , Condition factor (CF) (Real number) , Hepatosomatic index (HSI) (Real number) , Gonadosomatic index (GSI) (Real number) , Comments (String) , Severity of pathology (String)
Not specified
FASTQ Paired ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, Library Origine ID (Registered Sample - Library preparation) *, FASTQ R1 (String) *, FASTQ R2 (String) *
Not specified
Library ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *
Not specified
Count ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, Bam Origine ID (Registered Sample - BAM file) *
Not specified
Bam ID (String) *, Sample Origine ID (Registered Sample - Samples for dCod) *, FASTQ Paired Origine ID (Registered Sample - FASTQ Paired) *
Not specified
Sample ID (String) *, Sample name (String) , Date sampled (Date) , Treatment (String) , Fish# (sampling) (Integer) , Fish# (RNA-seq) (Integer) , Body wt in (g) (Integer) , Liver wt in (g) (Integer) , Sex (String) , Species (String) , Tissue (String)
Not specified
SAMPLE TYPE to describe samples of CEN.PK-113-7D yeast strain upon metabolic perturbation of the steady state culture by glucose pulse
SEEK ID (Integer) *, STRAIN (Registered Strain) , Genotype (String) , Cell culture ID (String) , Cell culture start date (Date) , Glucose pulse (concentration) (Integer) , Sampling date (Date) , Time after glucose pulse (Integer) , Cell part (Controlled Vocabulary - SysMO Sample Organism Part) , Age at sampling (Integer) *
Sample type representing the old BioSample model available to SysMO and VirtualLiver
Sample ID or name (String) *, Cell culture name (String) *, Cell culture lab identifier (String) , Cell culture start date (Date) , Cell culture growth type (Controlled Vocabulary - SysMO Cell Culture Growth Type) , Cell culture comment (Text) , Cell culture provider name (String) , Cell culture provider identifier (String) , Cell culture strain (Registered Strain) *, Sample lab identifier (String) *, Sampling date (Date) , Age at sampling (Integer) , Sample provider name (String) , Sample provider identifier (String) , Sample comment (Text) , Sample organism part (Controlled Vocabulary - SysMO Sample Organism Part)
Not specified
