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input/soft_filtered_transcripts.pep.filtered.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_06_assembly1-IPS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_06_assembly1-IPS

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Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRsofttoGenome_STARlong_Aligned.sortedByCoord.out.bam

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

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Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRsofttoGenome_STARlong_Aligned.sortedByCoord.out.bam.bai

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRsofttoGenome_STARlong_SJ.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRsofttoGenome_STARlong_Unmapped.out.mate1.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRtoGenome_STARlong_Aligned.sortedByCoord.out.bam

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRtoGenome_STARlong_Aligned.sortedByCoord.out.bam.bai

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

output/PcSpadesTRtoGenome_STARlong_SJ.out.tab

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_07_mapAs1ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_07_mapAs1ToGenome-STAR

Download

Created: 16th May 2022 at 11:49, Last updated: 6th Nov 2024 at 15:27

reports/PRO1976_S1_BA.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _S_P4_Pcitri_tr1-files

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:27

reports/PRO1976_S2-S8_BA.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _S_P4_Pcitri_tr1-files

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:27

reports/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _S_P4_Pcitri_tr1-files

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:27

input/input_dataset.yaml

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

output/hard_filtered_transcripts.fasta.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

output/soft_filtered_transcripts.fasta.fai.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

output/soft_filtered_transcripts.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

output/spades.log

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

output/transcripts.fasta.fai

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/_A_05_assembly1-rnaSPAdes/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _A_05_assembly1-rnaSPAdes

Download

Created: 16th May 2022 at 11:48, Last updated: 6th Nov 2024 at 15:27

reports/Insect RNA and RIN_Agilent.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _S_P4_Pcitri_tr1-files

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:27

reports/PRO1976_S1-S8_QC.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr1/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr1

Assays: _S_P4_Pcitri_tr1-files

Download

Created: 16th May 2022 at 10:35, Last updated: 6th Nov 2024 at 15:27

other/norm_cf_lcpm_MDS.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

other/norm_counts_filtered_MDS.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

other/norm_counts_raw&filtered_densityplots.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

other/PCA_biplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

other/SIGMA_vs_A_plot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

other/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

scripts/mapToIsoSeq_DE_limma-voom.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_05_DE_limma-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_05_DE_limma-R

Download

Created: 16th May 2022 at 11:47, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToIsoSeq_STAR_SVF03.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_04_mapIllumina-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_04_mapIllumina-STAR

Download

Created: 16th May 2022 at 11:46, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToIsoSeq_STAR_SVF05.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_04_mapIllumina-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_04_mapIllumina-STAR

Download

Created: 16th May 2022 at 11:46, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToIsoSeq_STAR_SVF06.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_04_mapIllumina-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_04_mapIllumina-STAR

Download

Created: 16th May 2022 at 11:46, Last updated: 6th Nov 2024 at 15:27

output/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_IsoSeq/_A_04_mapIllumina-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_IsoSeq

Assays: _A_04_mapIllumina-STAR

Download

Created: 16th May 2022 at 11:46, Last updated: 6th Nov 2024 at 15:27

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