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output/raw/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T12_CuInducible/_S_P1_TransientExp_Nb/_A_AgroinfNonGuidedPathwaywithCopperInducibledCas9EV-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T12_CuInducible

Studies: _S_P1_TransientExp_Nb

Assays: _A_AgroinfNonGuidedPathwaywithCopperInducibledC...

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Created: 10th Jan 2022 at 11:13, Last updated: 7th Nov 2024 at 10:03

output/raw/README.MD

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T12_CuInducible/_S_P1_TransientExp_Nb/_A_AgroinfNonGuidedPathwayywithConstitutivedCas9EV-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T12_CuInducible

Studies: _S_P1_TransientExp_Nb

Assays: _A_AgroinfNonGuidedPathwayywithConstitutivedCas...

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Created: 10th Jan 2022 at 11:14, Last updated: 7th Nov 2024 at 10:03

protocols/LUCIFERASE.docx

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T11_dCas9SynProm/_S_P1_SynProm_Nbenthamiana/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T11_dCas9SynProm

Studies: _S_P1_SynProm_Nbenthamiana

Assays: _S_P1_SynProm_Nbenthamiana-files

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Created: 10th Jan 2022 at 10:16, Last updated: 7th Nov 2024 at 10:01

scripts/mapToAssembly2_DE_limma-voom.R.old

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:07, Last updated: 6th Nov 2024 at 15:27

other/density_plot_before_lowexpr_filter.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/log10filteredcounts_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/log10rawcounts_boxplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/norm_cf_lcpm_MDS.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/norm_counts_filtered_MDS.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/norm_counts_raw&filtered_densityplots.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/PCA_biplot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/SIGMA_vs_A_plot.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

other/voom_mean-variance_trend.pdf

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:06, Last updated: 6th Nov 2024 at 15:27

scripts/mapToAssembly2_DE_limma-voom.R

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_05_As2_tr_limmaDE-R/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_05_As2_tr_limmaDE-R

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Created: 16th May 2022 at 12:07, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SMF09.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

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Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SMF10.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

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Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SMF11.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

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Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SVF02.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

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Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SVF03.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

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Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SVF05.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

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Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_SVF06.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/STAR_log.out.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/STAR_SJ.out.zip

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

reports/PcSpadesTRsofttoGenome_STARlong.Log.progress.out

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_03_mapAs2ToGenome-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_03_mapAs2ToGenome-STAR

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Created: 16th May 2022 at 12:04, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_EALL1.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:04, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_EF1.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:04, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_EF2.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:04, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_EF3.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:04, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_EM1.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

output/Pcitri_mapToAssembly_STAR_EM2.counts

SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture

_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_04_mapReadsToAs2-STAR/

Creator: Marko Petek

Submitter: Marko Petek

Investigations: _I_T31_mealybug

Studies: _S_P4_Pcitri_tr2

Assays: _A_04_mapReadsToAs2-STAR

Download

Created: 16th May 2022 at 12:05, Last updated: 6th Nov 2024 at 15:27

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