Projects: Mass spectrometry proteomics for biomarker discovery, Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", MS identification of L infantum proteins related to their drug resistance patterns for new drug targets identification and ecotoxicological evaluations of their environmental and interspecies impact, Enhanced Anticancer Effect of Thymidylate Synthase Dimer Disrupters Promoting Intracellular Accumulation, Biochemical characterization of the feedforward loop between CDK1 and FOXM1 in epidermal stem cells, Drug Discovery and Biotechnology Standard Operating Procedures
Institutions: Università degli Studi di Modena e Reggio Emilia (UNIMORE), Università di Modena e Reggio Emilia
https://orcid.org/0000-0002-7244-7106Junior researcher in Medicinal Chemistry
Expertise: pest management, semiochemicals, pheromones, chemical ecology, plant protection
Expertise: Biochemical analysis, protein extraction, protein purification, ELISA, Immunoblots, Immunoassays, oral food challenge, Data analysis, Mass spectrometry (LC-MS/MS), food allergy, peanut and treenut allergy, Molecular Biology, Microbiology
Tools: Biochemistry and protein analysis, molecular biology techniques, 1D and 2D SDSPAGE, immunoblot, ELISA Techniques, Immunological techniques, oral food challenge matrix preparation for food allergy research, data analysis and data management, Mass spectrometry, protein purification, food allergen characterisation
Projects: SCaRAB, STREAM, SYSTERACT, INBioPharm
Institutions: SINTEF, Norwegian University of Science and Technology
Expertise: Bioinformatics, Microarray analysis, Data analysis, Pseudomonas, Streptomyces, Stoichiometric modelling, Prokaryotic genetics, Analytical chemistry
Tools: Transcriptomics, Perl, Fermentation, GC and LC analysis of metabolites, Pathway Tools, MS imaging, Mass spectrometry (LC-MS/MS), Mass spectrometry, FT-ICR-MS, Field Flow Fractionation
Senior Research Scientist at SINTEF, Dept. of Biotechnology and Nanomedicine, Research Group Mass Spectrometry
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Imperial College London
I am a first year PhD student at Imperial College London. My undergraduate degree was in Chemistry with a focus in medicinal Chemistry. My PhD project focuses on using chemical proteomics to obtain time resolved data of hypothesized signalling networks in cancer. More specifically, I study the roles of the KLK Activome in prostate cancer progression. My future research goals include developing a deterministic kinetic model of the KLK Activome that will aid in the discovery of novel therapeutics ...
Projects: PSYSMO
Institutions: Helmholtz Centre for Infection Research Braunschweig
Expertise: functional protein expression, protein-protein interactions, Microbiology/ Protein chemistry/ Molecular biology, genetic engineering
Tools: Mass spectrometry, Proteomics (2D-PAGE), protein interaction studies, in vivo crosslinking, affinity copurification/precipitation, model prediction testing
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_14-31.xlsx, samples-publish2021-03-30_15-51.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_15-51.xlsx, samples-publish2021-03-30_17-07.xlsx
Snapshots: No snapshots
Creator: Lorenzo Tagliazucchi
Submitter: Lorenzo Tagliazucchi
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Lorenzo Tagliazucchi
Submitter: Lorenzo Tagliazucchi
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: None
Submitter: Lorenzo Tagliazucchi
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: None
Submitter: Lorenzo Tagliazucchi
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Master file, aggregates metabolite concentrations inside and outside the cell, protein copy number and flux estimates for metabolites in the core model. Based on all internal metabolite concentrations, external metabolite concentrations from growth curve data, flux of glucose, lactate and acetate based on growth curve data and protein copy number data for enzyme concentrations. Combines absolute and relative measurements and metabolomics measurements from different experiment to get an as complete ...
Creator: Niels Zondervan
Submitter: Niels Zondervan
Investigations: Modelling of M. pneumoniae metabolism
Studies: Core Model training, Metabolomics measurements, Proteomics analysis
Assays: Construction and training of the core model, Metabolomics external metabolites measurements, Metabolomics internal metabolites, time series ..., Proteomics assay
Contains: -Relative metabolite measurements at different time points from all experiments -Absolute metabolite measurements for amino-acid analysis of the proteome and the cytosol -Effect on adding CaCl2, KCl or NaCl to the medium on growth -Effect of spiking of growth medium with additional amino acids
Creators: Niels Zondervan, Luis Serrano, Maria Lluch, Eva Yus
Submitter: Niels Zondervan
Investigations: Modelling of M. pneumoniae metabolism
Studies: Metabolomics measurements