SEEK ID: https://fairdomhub.org/people/912
Location:
Spain
Expertise: Not specified
Tools: Not specified
Related items
- Programmes (1)
- Projects (1)
- Institutions (1)
- Studies (1)
- Assays (2)
- Data files (2)
- SOPs (1)
- Publications (1)
Projects that do not fall under current programmes.
Projects: Manchester Institute for Biotechnology, ICYSB 2015 - International Practical Course in Systems Biology, iRhythmics, INBioPharm, EmPowerPutida, Systo models, MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, Multiscale modelling of state transitions in the host-microbiome-brain network, Extremophiles metabolsim, NAD COMPARTMENTATION, Agro-ecological modelling, Bergen(Ziegler lab) project AF-NADase, NAMPT affinity, Stress granules, Modelling COVID-19 epidemics, Bio-crop, ORHIZON, Coastal Data, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, hybrid sequencing, HOST-PAR, BioCreative VII, Boolean modeling of Parkinson disease map, Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish, Selective Destruction in Ageing, Viral Metagenomic, Synthetic biology in Synechococcus for bioeconomy applications (SynEco), testproject, SDBV ephemeral data exchanges, Test project, The BeeProject, PHENET, LiceVault, EbN1 Systems Biology, UMRPƩgase, DeCipher, Heat stress response of the red-tide dinoflagellate Prorocentrum cordatum, middle ear, datamgmt, Institut Pasteur's projects, The nucleus of Prorocentrum cordatum, qpcr, MRC-UNICORN, Test project for Sciender, qPCR, Artificial organelles_Pathogen digestion, Supplementary Information 2 associated with the manuscript entitled " Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", FAIR Functional Enrichment, PTPN11 mutagenesis, Supplementary Information 2 associated with the manuscript entitled "Label free Mass spectrometry proteomics reveals different pathways modulated in THP-1 cells infected with therapeutic failure and drug resistance Leishmania infantum clinical isolates", iPlacenta- Placenta on a chip, Near Surface Wave-Coherent Measurements of Temperature and Humidity, A Meta-Analysis of Functional Recovery of Aphasia after Stroke by Acupuncture Combined with Language Rehabilitation Training, Phytoplankton phenology in the Bay of Biscay: using remote sensing to assess and raise awareness of climate change impacts on the sea, Master-BIDS, Endometriosis, Vitis Data Crop, MESI-STRAT Review, Establishing an innovative and transnational feed production approach for reduced climate impact of the aquaculture sector and future food supply, ARAX: a web-based computational reasoning system for translational biomedicine, Adaptation of Salmonella enterica, I AM FRONTIER, Salmonella enterica relies on carbon metabolism for adaptation to agricultural environments, PhD Nicotinic Acetylcholine Receptors, SFB1361 playground, Amaizing, An expansive chloroplast and its photosynthetic apparatus in the marine dinoflagellate Prorocentrum cordatum
Web page: Not specified
The MycoSynVac project AIMS at using cutting-edge synthetic biology methodologies to engineer Mycoplasma pneumoniae as a universal chassis for vaccination. Designing a universal Mycoplasma chassis that can be deployed as single- or multi-vaccine in a range of animal hosts. Annually, infections caused by Mycoplasma species in poultry, cows, and pigs result in multimillion Euro losses in the USA and Europe. There is no effective vaccination against many Mycoplasmas that infect pets, humans and farm ...
Programme: Independent Projects
Public web page: http://www.mycosynvac.eu/
Organisms: Mycoplasma pneumoniae
Contains copy number per locus tag at different times of Growth between 0.25h and 96 hours. M. pneumoniae was grown in Batch, cells attached to the bottom of the flask (single cell layer), non stirred, non aerated.
Submitter: Niels Zondervan
Investigation: Modelling of M. pneumoniae metabolism
Assays: Transcriptomics assay of M. pneumoniae at diferent times of growth
Snapshots: No snapshots
Submitter: Niels Zondervan
Assay type: Transcriptional Profiling
Technology type: Technology Type
Investigation: Modelling of M. pneumoniae metabolism
Organisms: No organisms
SOPs: No SOPs
Data files: Absolute copy number per locus tag, M. pneumoni...
Snapshots: No snapshots
Simple overview of all samples used for training, internal validation by copasi en external validation. Overview of samples metadata, mean metabolite concentration and enzyme concentrations used in the model. Only metabolites present in the model are shown.
Submitter: Niels Zondervan
Assay type: Experimental Assay Type
Technology type: Mass Spectrometry
Investigation: Modelling of M. pneumoniae metabolism
Study: Metabolomics measurements
Organisms: No organisms
SOPs: No SOPs
Data files: Internal metabolite concentrations time series
Snapshots: No snapshots
Contains: -Relative metabolite measurements at different time points from all experiments -Absolute metabolite measurements for amino-acid analysis of the proteome and the cytosol -Effect on adding CaCl2, KCl or NaCl to the medium on growth -Effect of spiking of growth medium with additional amino acids
Creators: Niels Zondervan, Luis Serrano, Maria Lluch, Eva Yus
Submitter: Niels Zondervan
Investigations: Modelling of M. pneumoniae metabolism
Studies: Metabolomics measurements
Contains the absolute copy number per locus tag during growth between 0.25 and 96hours of growth Growth in batch, cells attached to the bottom of the flask, non-aerated, non-stirred
Creators: Luis Serrano, Maria Lluch, Eva Yus
Submitter: Niels Zondervan
Investigations: Modelling of M. pneumoniae metabolism
Metabolomics perturbation sample preparation and description of how the exact details of the perturbations. Perturbations: -Glucose starvation -Amino acid starvation -Fe2+ depletion -Oxidative stress via H2O2 -Glycerol addition to the medium
Creators: Niels Zondervan, Luis Serrano, Maria Lluch, Eva Yus
Submitter: Niels Zondervan
Investigations: Modelling of M. pneumoniae metabolism
Studies: Metabolomics measurements
Abstract (Expand)
Authors: J. A. Wodke, J. Puchalka, M. Lluch-Senar, J. Marcos, E. Yus, M. Godinho, R. Gutierrez-Gallego, V. A. dos Santos, L. Serrano, E. Klipp, T. Maier
Date Published: 4th Apr 2013
Publication Type: Not specified
PubMed ID: 23549481
Citation: Mol Syst Biol. 2013;9:653. doi: 10.1038/msb.2013.6.