Web page: https://superfund.mit.edu/
Funding details:Related items
- People (5)
- Projects (1)
- Institutions (1)
- Investigations (1)
- Studies (5+1)
- Assays (28)
- Data files (37+22)
- SOPs (23+5)
- Publications (1)
- Samples (1164)
Projects: IMPAcTB, MIT SRP, MetNet, Endometriosis
Institutions: Massachusetts Institute of Technology
Projects: IMPAcTB, MIT SRP, MetNet
Institutions: Massachusetts Institute of Technology
Projects: MIT SRP, IMPAcTB, MetNet
Institutions: Massachusetts Institute of Technology

Institutions: Massachusetts Institute of Technology
Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology
Institutions: Massachusetts Institute of Technology
Programme: MIT Superfund Research
Public web page: Not specified
Organisms: Not specified
Submitter: Dikshant Pradhan
Studies: Benthic fluxes of fluorescent dissolved organic material, salt and heat ..., Excision of mutagenic replication-blocking lesions suppresses cancer but..., Interaction of N-Nitroamines with Bincuelar Copper Complexs for Luminsec..., Molecular origins of mutational spectra produced by the environmental ca..., Novel In Vivo CometChip Reveals NDMA-Induced DNA Damage and Repair in Mu...
Assays: Absorption and Emission Spectroscopy - Data Linked, Absorption and Emission Spectroscopy Analysis - Data Linked, Chemical Challenge - Metadata, Chemical Synthesis - Metadata, Comet Chip - Data Linked, Comet Chip Analysis - Data Attached, Crystallography - Data Linked, Electron Paramagnetic Resonance - Data Linked, Extraction and Library Creation - Metadata, Field Water Sensor Run, GPT Assay - Data Attached, GPT Assay – Data Attached, Genome Alignment - Data Linked, High Resolution Mass Spectra - Data Linked, High Resolution Mass Spectra Analysis - Data Linked, Illumina Sequencing - Data Linked, Mass Spectrometry Processing – Data Linked, Mass Spectrometry – Data Linked, Mouse Necropsy – Metadata, Mutational Spectral Analysis - Data Attached, Necropsy - Metadata, Nuclear Magnetic Resonance Spectroscopy - Data Linked, Nuclear Magnetic Resonance Spectroscopy Analysis - Data Linked, RaDR Image Machine Learning Analysis – Data Attached, Tissue Collection - Metadata, Tissue Imaging – Metadata, Tissue Lysis – Metadata, X-ray Photoelectron Spectroscopy - Data Linked
Snapshots: No snapshots
Norah Owiti, Joshua Corrigan, Lee Pribyl, Jennifer Kay, Bevin Engelward
https://doi.org/10.3390/ijms231911776
The comet assay is a versatile assay for detecting DNA damage in eukaryotic cells. The assay can measure the levels of various types of damage, including DNA strand breaks, abasic sites and alkali-sensitive sites. Furthermore, the assay can also be modified to include purified DNA glycosylases so that alkylated and oxidized bases can be detected. The ...
Submitter: Charles Demurjian
Investigation: MIT SRP
Assays: Chemical Challenge - Metadata, Comet Chip - Data Linked, Comet Chip Analysis - Data Attached, Tissue Collection - Metadata
Snapshots: No snapshots
Irene Hu and Harold Hemond
Aquatic eddy covariance (AEC) is an in situ technique for measuring fluxes in marine and freshwater systems based on the covariance of velocity and concentration measurements. Here, development of a fast multiple-channel sensor (FACT) enables the use of AEC for measurement of benthic fluxes of fluorescent dissolved organic material, salt, and heat at three distinct sites in Massachusetts, USA, including the ...
Snapshots: Snapshot 1
Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward
doi: https://doi.org/10.1101/2021.01.12.426356
Link to all of the Imaging done in this study: https://omero.mit.edu/webclient/?show=project-153 ...
Submitter: Dikshant Pradhan
Investigation: MIT SRP
Assays: GPT Assay – Data Attached, Mass Spectrometry Processing – Data Linked, Mass Spectrometry – Data Linked, Mouse Necropsy – Metadata, RaDR Image Machine Learning Analysis – Data Attached, Tissue Imaging – Metadata, Tissue Lysis – Metadata
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4
Haosheng Feng, Shao-Xiong Lennon Luo, Robert G Croy, John M. Essigmann, Timothy M. Swager
https://doi.org/10.1039/D2DT03848J
Cu(I) from tetrakis(acetonitrile)copper(I) hexafluorophosphate ([Cu(MeCN)4]PF6) was complexed with five structurally related phosphines containing N-heterocycles. The interactions between the resulting complexes and some N-nitrosamines were studied using X-ray crystallography as well as emission spectroscopy. Upon complexation, three ...
Submitter: Charles Demurjian
Investigation: MIT SRP
Assays: Absorption and Emission Spectroscopy - Data Linked, Absorption and Emission Spectroscopy Analysis - Data Linked, Chemical Synthesis - Metadata, Crystallography - Data Linked, Electron Paramagnetic Resonance - Data Linked, High Resolution Mass Spectra - Data Linked, High Resolution Mass Spectra Analysis - Data Linked, Nuclear Magnetic Resonance Spectroscopy - Data Linked, Nuclear Magnetic Resonance Spectroscopy Analysis - Data Linked, X-ray Photoelectron Spectroscopy - Data Linked
Snapshots: Snapshot 1
Amanda L. Armijo, Pennapa Thongaram, Bogdan I. Fedeles, Judy Yau, Jennifer E Kay, Joshua J. Corrigan, Marisa Chancharoen, Supawadee Chawanthayatham, Leona D. Samson, Sebastian E. Carrasco, Bevin P. Engelward, James G. Fox, Robert G. Croy & John M. Essigmann
DNA-methylating environmental carcinogens such as N-nitrosodimethylamine (NDMA) and certain alkylators used in chemotherapy form O6-methylguanine (m6G) as a functionally critical intermediate. NDMA ...
Submitter: Charles Demurjian
Investigation: MIT SRP
Assays: Extraction and Library Creation - Metadata, GPT Assay - Data Attached, Genome Alignment - Data Linked, Illumina Sequencing - Data Linked, Mutational Spectral Analysis - Data Attached, Necropsy - Metadata
Snapshots: Snapshot 1
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ENG-200806-V2_Short-Term-Collection-at-Necrop..., P.ENG-201008-V1_Med-Term-Collection-at-Necropsy...
Data files: samples-publish2021-03-30_16-25.xlsx, samples-publish2021-03-30_17-38.xlsx, samples-publish2021-09-20_22-36.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_16-04.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_15-51.xlsx, samples-publish2021-03-30_17-07.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_14-31.xlsx, samples-publish2021-03-30_15-51.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: samples-publish2021-03-30_17-07.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ESS-201123-V1_gpt-NextGen-Protocol.pdf
Data files: 10.1016.j.celrep.2021.108864_GPT_assay, D.GPT-samples-publish2021-12-13_23-22.xlsx
Snapshots: No snapshots
Submitter: Dikshant Pradhan
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: A.IMG-samples-publish2021-12-13_22-22.xlsx, WAD_RaDR_roi_extraction_10.1016.j.celrep.2021.1..., samples-publish2021-03-30_16-04.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: 2 hidden items
Data files: 2 hidden items
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: 2 hidden items
Data files: 2 hidden items
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: 2 hidden items
Data files: 3 hidden items
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: 1 hidden item
Data files: 15 hidden items
Snapshots: No snapshots
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.HEM-220913-V2_20210513_fieldworkOperatingProc..., P.HEM-220913-V2_20210520_fieldworkOperatingProc..., P.HEM-220913-V2_20210610_fieldworkOperatingProc...
Data files: D.SNSR-samples-publish2022-10-11_18-50.xlsx, LOC-samples-publish2022-10-11_18-37.xlsx and 3 hidden items
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: MUS-samples-publish2023-03-08_12-23.xlsx, PAV-samples-publish2023-03-08_12-32.xlsx, TIS-samples-publish2023-03-08_12-40.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.SWA-230223-V1_synthesis-protocol
Data files: CHM-samples-publish2023-03-16_10-12.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ENG-200806-V2_Short-Term-Collection-at-Necrop..., P.ENG-200831-V1_NDMA-Juvenile-Mouse-Injection-P..., P.ENG-220105-V1_NDMA-Juvenile-Mouse-Single-Inje..., P.ENG-220105-V1_Tissue-Collection-at-Necropsy-(..., P.ESS-230303-V2_Cell-culture.docx
Data files: CEL-samples-publish2023-03-08_11-57.xlsx, DNA-samples-publish2023-03-08_13-15.xlsx, TIS-samples-publish2023-03-08_12-40.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.SWA-230302-V1_Fluorescence-and-XPS
Data files: CHM-samples-publish2023-03-16_10-12.xlsx, D.SPC-samples-publish2023-03-16_10-23.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ESS-201123-V1_gpt-NextGen-Protocol-.pdf
Data files: D.GPT-samples-publish2023-03-08_13-55.xlsx, DNA-samples-publish2023-03-08_13-15.xlsx, NDMA_in-vivo_gpt_data.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: No SOPs
Data files: A.SPC-samples-publish2023-03-16_10-25.xlsx, D.SPC-samples-publish2023-03-16_10-23.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.ESS-230308-V2_Duplex-sequencing.docx
Data files: D.SEQ-samples-publish2023-03-24_13-17.xlsx, DNA-samples-publish2023-03-08_13-15.xlsx
Snapshots: No snapshots
Submitter: Charles Demurjian
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: MIT SRP
Organisms: No organisms
SOPs: P.SWA-230302-V1_NMR
Data files: CHM-samples-publish2023-03-16_10-12.xlsx, D.NMR-samples-publish2023-03-16_11-23.xlsx
Snapshots: No snapshots
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: Genome Alignment - Data Linked, Illumina Sequencing - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: Genome Alignment - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Interaction of N-Nitroamines with Bincuelar Cop...
Assays: Crystallography - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Interaction of N-Nitroamines with Bincuelar Cop...
Assays: Absorption and Emission Spectroscopy - Data Linked, Chemical Synthesis - Metadata, Crystallography - Data Linked, Electron Paramagnetic Resonance - Data Linked, High Resolution Mass Spectra - Data Linked, Nuclear Magnetic Resonance Spectroscopy - Data ..., X-ray Photoelectron Spectroscopy - Data Linked
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: GPT Assay - Data Attached
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: GPT Assay - Data Attached
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: GPT Assay - Data Attached
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: Extraction and Library Creation - Metadata, Necropsy - Metadata
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Interaction of N-Nitroamines with Bincuelar Cop...
Assays: Chemical Synthesis - Metadata
Creator: Charles Demurjian
Submitter: Charles Demurjian
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: GPT Assay - Data Attached
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Studies: Molecular origins of mutational spectra produce...
Assays: Genome Alignment - Data Linked, Mutational Spectral Analysis - Data Attached
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Charles Demurjian
Submitter: Charles Demurjian
Investigations: MIT SRP
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Jake Schissel
Submitter: Jake Schissel
Investigations: MIT SRP
Studies: Benthic fluxes of fluorescent dissolved organic...
Assays: Field Water Sensor Run
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Next-Gen GPT Assay Protocol
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: MIT SRP
Studies: Excision of mutagenic replication-blocking lesi...
Assays: GPT Assay – Data Attached
Collection of Tissues at Necropsy of Short-Term Animals
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: MIT SRP
Studies: Excision of mutagenic replication-blocking lesi...
Assays: Mouse Necropsy – Metadata
Medium-Term Tissue Collection at Necropsy
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Investigations: MIT SRP
Studies: Excision of mutagenic replication-blocking lesi...
Assays: Mouse Necropsy – Metadata
Abstract
Authors: Jennifer E. Kay, Joshua J. Corrigan, Amanda L. Armijo, Ilana S. Nazari, Ishwar N. Kohale, Dorothea K. Torous, Svetlana L. Avlasevich, Robert G. Croy, Dushan N. Wadduwage, Sebastian E. Carrasco, Stephen D. Dertinger, Forest M. White, John M. Essigmann, Leona D. Samson, Bevin P. Engelward
Date Published: 1st Mar 2021
Publication Type: Journal
DOI: 10.1016/j.celrep.2021.108864
Citation: Cell Reports 34(11):108864