IMPAcTB

Overview
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No description specified

Web page: https://www.niaid.nih.gov/research/immune-mechanisms-protection-mycobacterium-tuberculosis

Funding details:

No funding details specified

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Charles Demurjian

Projects: IMPAcTB, MIT SRP, MetNet, Endometriosis

Institutions: Massachusetts Institute of Technology

Huiming Ding

Projects: IMPAcTB, MIT SRP, MetNet

Institutions: Massachusetts Institute of Technology

Stuart Levine

Projects: MIT SRP, IMPAcTB, MetNet

Institutions: Massachusetts Institute of Technology

https://orcid.org/0000-0001-7363-562X

Dikshant Pradhan

Projects: IMPAcTB, MIT SRP

Institutions: Massachusetts Institute of Technology

Researcher at BioMIcro Center, Data Management and Analysis Core; Massachusetts Institute of Technology

Jake Schissel

Projects: IMPAcTB, MIT SRP

Institutions: Massachusetts Institute of Technology

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IMPAcTB

No description specified

Programme: IMPAcTB

Public web page: Not specified

Organisms: Not specified

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Massachusetts Institute of Technology

Country: United States

City: Not specified

Web page: Not specified

Advanced Investigations list for this Programme with search and filtering

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Studies: CD8+ lymphocytes are critical for early control of tuberculosis in macaques, Fc-FcγR interactions shift alveolar macrophage metabolism to promote Myc..., Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resis..., Multimodal profiling of lung granulomas in macaques reveals cellular cor..., Robust IgM responses following intravenous vaccination with Bacille Calm..., T cell signatures of bacterial control among M. tuberculosis 'resisters'

Assays: All Metadata, Anti-Microbial Assay – Metadata, Antibody-Dependent Cellular Phagocytosis - Data Linked, Antibody-Dependent Neutrophil Phagocytosis - Data Linked, Bacterial Extraction - Metadata, DNA Extraction - Metadata, Digitally Barcoded Mtb Matrix Analysis - Data Attached, FC Receptor Binding Assay - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Attached, Flow Cytometry Analysis - Data Linked, Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked, Functional Assay – Metadata, Immunohistochemistry - Data Linked, Immunohistochemistry – Data Linked, Library Creation – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Necropsy – Metadata, NHP Tissue Collection – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, PET/CT Scan - Data Linked, Patient Visit - Metadata, Patient Visit - Metadata, Patient Visit - Metadata, Patient Visit – Metadata, Patient Visit – Metadata, Short Read Sequencing - Data Linked, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Single Cell Sequencing – Data Linked, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Collection - Metadata, Tissue Extraction – Metadata, Titer Assay - Data Linked

Snapshots: No snapshots

Created: 14th Jan 2021 at 16:10, Last updated: 18th Oct 2021 at 16:05

Advanced Studies list for this Programme with search and filtering

CD8+ lymphocytes are critical for early control of tuberculosis in macaques

IMPAcTB

Caylin G. Winchell, Sarah K. Nyquist, Michael C. Chao, Pauline Maiello, Amy J. Myers, Forrest Hopkins, Michael Chase, Hannah P. Gideon, Kush V. Patel, Joshua D. Bromley, Andrew W. Simonson, Roisin Floyd-O’Sullivan, Marc Wadsworth, Jacob M. Rosenberg, Rockib Uddin, Travis Hughes, Ryan J. Kelly, Josephine Griffo, Jaime Tomko, Edwin Klein, Bonnie Berger, Charles A. Scanga, Joshua Mattila, Sarah M. Fortune, Alex K. Shalek, Philana Ling Lin, JoAnne L. Flynn; CD8+ lymphocytes are critical for early ...

Submitter: Charles Demurjian

Investigation: IMPAcTB

Assays: All Metadata, Bacterial Extraction - Metadata, DNA Extraction - Metadata, Digitally Barcoded Mtb Matrix Analysis - Data Attached, Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Attached, Immunohistochemistry - Data Linked, PET/CT Scan - Data Linked, Patient Visit - Metadata, Short Read Sequencing - Data Linked, Single Cell Expression Analysis - Data Linked, Tissue Collection - Metadata

Snapshots: Snapshot 1, Snapshot 2

Created: 17th Feb 2023 at 23:56, Last updated: 23rd Oct 2023 at 22:27

Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control

IMPAcTB

Hannah P.Gideon, Travis K.Hughes, Constantine N.Tzouanas, Marc H.WadsworthII, Ang AndyTu, Todd M.Gierahn, Joshua M.Peters, Forrest F.Hopkins, Jun-RongWei, Conner Kummerlowe, Nicole L.Grant, Kievershen Nargan, Jia YaoPhuah, H. JacobBorish, Pauline Maiello, Alexander G.White, Caylin G.Winchell, Sarah K.Nyquist, Sharie Keanne C.Ganchua, Amy Myers, Kush V.Patel, Cassaundra L.Ameel, Catherine T.Cochran, Samira Ibrahim, Jaime A.Tomko, Lonnie JamesFrye, Jacob ...

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Immunohistochemistry – Data Linked, Library Creation – Metadata, NHP Necropsy – Metadata, PET-CT Scan Analysis – Data Linked, PET-CT Scan – Data Linked, Patient Visit – Metadata, Single Cell Clustering Analysis – Data Linked, Single Cell Expression Matrix Analysis – Data Linked, Single Cell Sequencing – Data Linked

Snapshots: Snapshot 1

Created: 20th May 2022 at 19:42, Last updated: 4th Aug 2023 at 16:56

T cell signatures of bacterial control among M. tuberculosis 'resisters'

IMPAcTB

Meng Sun*, Jolie M. Phan*, Nathan S. Kieswetter, Krystle K.Q. Yu, Malisa T. Smith, Huang Huang, Sanjana Gupta, Gerlinde Obermoser, Holden Terry Maecker, Akshaya Krishnan, Neha Gupta, Mary Rieck, Peter Acs, Mustafa Ghanizada, Shin-Heng Chiou, Purvesh Khatri, W. Henry Boom, Thomas R. Hawn, Catherine M. Stein, Harriet Mayanja-Kizza, Mark M. Davis*, Chetan Seshadri*

Abstract: A subset of individuals with a high probability of exposure to M. tuberculosis (M.tb) ...

Submitter: Charles Demurjian

Investigation: IMPAcTB

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked, Patient Visit - Metadata, Tissue Collection - Metadata

Snapshots: No snapshots

Created: 8th May 2023 at 22:12, Last updated: 17th May 2023 at 22:46

Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection

IMPAcTB

Thiel BA, Worodria W, Nalukwago S, Nsereko M, Sanyu I, Rejani L, Zawedde J, Canaday DH, Stein CM, Chervenak KA, Malone LL, Kiyemba R, Silver RF, Johnson JL, Mayanja-Kizza H, Boom WH. Immune cells in bronchoalveolar lavage fluid of Ugandan adults who resist versus those who develop latent Mycobacterium tuberculosis infection. PLoS One. 2021 Apr 9;16(4):e0249477. doi: 10.1371/journal.pone.0249477. PMID: 33836031; PMCID: PMC8034721.

Abstract: ...

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Flow Cytometry Processing – Data Attached, Flow Cytometry – Data Linked, Patient Visit – Metadata, Tissue Collection - Metadata

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.study.872.1

Created: 18th Oct 2021 at 16:01, Last updated: 15th May 2023 at 22:35

Fc-FcγR interactions shift alveolar macrophage metabolism to promote Mycobacterium tuberculosis restriction in mice

IMPAcTB

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Single Cell Sequencing Analysis – Data Linked, Single Cell Sequencing – Data Linked, Tissue Extraction – Metadata

Snapshots: Snapshot 1, Snapshot 2

Created: 9th Mar 2022 at 19:59, Last updated: 12th Apr 2023 at 22:20

Robust IgM responses following intravenous vaccination with Bacille Calmette-Guerin associate with prevention of Mycobacterium tuberculosis infection in macaques. Irvine et al (2021)

IMPAcTB

Development of an effective tuberculosis (TB) vaccine has suffered from an incomplete understanding of the correlates of protection against Mycobacterium tuberculosis (Mtb). Intravenous (i.v.) vaccination with Bacille Calmette–Guérin (BCG) provides nearly complete protection against TB in rhesus macaques, but the antibody response it elicits remains incompletely defined. Here we show that i.v. BCG drives superior antibody responses in the plasma and the lungs of rhesus macaques compared to ...

Submitter: Dikshant Pradhan

Investigation: IMPAcTB

Assays: Anti-Microbial Assay – Metadata, Functional Assay – Metadata, Luminex Assay – Metadata, Luminex Data Processing – Data Attached, NHP Tissue Collection – Metadata

Snapshots: Snapshot 1

Created: 25th Oct 2021 at 02:43, Last updated: 2nd Sep 2022 at 19:03

6 hidden items

Showing 20 out of a possible 43 Assays Advanced Assays list for this Programme with search and filtering

NHP Tissue Collection – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: No SOPs

Data files: CEX-samples-publish2022-01-28_00-10.xlsx, NHP-samples-publish2022-01-28_00-20.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:52, Last updated: 21st Apr 2022 at 20:16

Luminex Assay – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_NHP-FcR-Luminex-Protocol-EI.doc, P.ALT-211020-V1_NHP-Isotype-Luminex-Protocol-EI..., P.ALT-211203-V1_BCG_study_EI_luminex_panel.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:54, Last updated: 21st Apr 2022 at 20:16

Luminex Data Processing – Data Attached

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-220127-V1_EI-IV_BCG_PLS-DA_Statistics.docx

Data files: A.LMX-samples-publish2022-01-27_23-59.xlsx, D.FILE-220127ALT-1_Data_EI_IV_BCG_IgM_SystemsSe..., D.FILE-samples-publish2022-01-28_00-04.xlsx

Snapshots: No snapshots

Created: 27th Jan 2022 at 16:54, Last updated: 21st Apr 2022 at 20:17

Anti-Microbial Assay – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211119-V1_Mac-Live-Dead-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Opsonize-Protocol-EI.docx, P.ALT-211119-V1_Mac-Lux-Protocol-EI.docx

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 21:59, Last updated: 21st Apr 2022 at 20:18

Functional Assay – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Robust IgM responses following intravenous vacc...

Organisms: No organisms

SOPs: P.ALT-211020-V1_LAM-ADCP-Protocol-EI.doc, P.ALT-211020-V1_LAM-ADNP-Protocol-EI.doc, P.ALT-211101-V1_LAM-ADNKA-Protocol-EI.doc

Data files: No Data files

Snapshots: No snapshots

Created: 27th Jan 2022 at 22:07, Last updated: 21st Apr 2022 at 20:18

Tissue Extraction – Metadata

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: MUS-samples-publish2022-03-15_01-19.xlsx, TIS-samples-publish2022-03-15_01-23.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 18:10, Last updated: 21st Apr 2022 at 19:47

Single Cell Sequencing – Data Linked

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: D.SEQ-samples-publish2022-03-25_04-01.xlsx

Snapshots: No snapshots

Created: 24th Mar 2022 at 20:56, Last updated: 21st Apr 2022 at 19:50

Single Cell Sequencing Analysis – Data Linked

IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-FcγR interactions shift alveolar macrophage ...

Organisms: No organisms

SOPs: No SOPs

Data files: A.SCCLUST-samples-publish2022-04-08_05-10.xlsx, A.SCEXPR-samples-publish2022-04-08_05-07.xlsx

Snapshots: No snapshots

Created: 7th Apr 2022 at 23:03, Last updated: 21st Apr 2022 at 19:48

Patient Visit – Metadata

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Mtb-Infection.rtf, P.FLY-220823-V1_P---NHP_housing.docx, P.FLY-220823-V1_P---Necropsy.docx, P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: NHP-samples-publish2022-09-28_17-30.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:01, Last updated: 3rd Nov 2022 at 17:00

NHP Necropsy – Metadata

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---Bacteria-Burden.docx, P.FLY-220823-V1_P---Chromosomal-Equivalents.rtf, P.FLY-220823-V1_P---Necropsy.docx

Data files: PAV-samples-publish2022-11-3_15-09.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:03, Last updated: 3rd Nov 2022 at 17:02

Library Creation – Metadata

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as..., P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: DNA-samples-publish2022-10-18_00-56.xlsx, TIS-samples-publish2022-10-11_23-37.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:04, Last updated: 25th Oct 2022 at 16:28

Single Cell Sequencing – Data Linked

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220819-V1_SeqWellHughes.et.al.Master.Prot...

Data files: D.SEQ-samples-publish2022-10-25_19-32.xlsx, DNA-samples-publish2022-10-18_00-56.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:06, Last updated: 25th Oct 2022 at 17:32

Single Cell Expression Matrix Analysis – Data Linked

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

Data files: A.SCXP-samples-publish2022-10-25_21-23.xlsx, D.SEQ-samples-publish2022-10-25_19-32.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:07, Last updated: 25th Oct 2022 at 19:15

Single Cell Clustering Analysis – Data Linked

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.SHA-220824-V1_P---Clustering.docx

Data files: A.SCCL-samples-publish2022-10-28_13-03.xlsx, A.SCXP-samples-publish2022-10-25_21-23.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:07, Last updated: 28th Oct 2022 at 15:09

Immunohistochemistry – Data Linked

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220824-V1_P---Immunohistochemistry-Analys...

Data files: AB-samples-publish2022-10-28_14-18.xlsx, ABP-samples-publish2022-10-28_14-25.xlsx, D.IMG-samples-publish2022-10-28_14-40.xlsx, samples-publish2023-03-21_22-232.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:08, Last updated: 22nd Mar 2023 at 04:40

PET-CT Scan – Data Linked

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: D.IMG-samples-publish2022-10-28_13-10.xlsx, PAV-samples-publish2022-11-3_15-09.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:09, Last updated: 3rd Nov 2022 at 17:10

PET-CT Scan Analysis – Data Linked

IMPAcTB

No description specified

Submitter: Jake Schissel

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Multimodal profiling of lung granulomas in maca...

Organisms: No organisms

SOPs: P.FLY-220823-V1_P---PET_CT_Imaging.docx

Data files: A.CTSC-samples-publish2022-10-28_13-14.xlsx, D.IMG-samples-publish2022-10-28_13-10.xlsx

Snapshots: No snapshots

Created: 14th Sep 2022 at 21:12, Last updated: 28th Oct 2022 at 15:23

Patient Visit - Metadata

IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: T cell signatures of bacterial control among M....

Organisms: No organisms

SOPs: P.BOO-230324-V1_KC_Protocol

Data files: PAT-samples-publish2023-05-17_13-17.xlsx, PAV-samples-publish2023-05-17_13-27.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 22:19, Last updated: 18th Aug 2023 at 22:45

Tissue Collection - Metadata

IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: T cell signatures of bacterial control among M....

Organisms: No organisms

SOPs: P.BOO-230324-V1_KC_Protocol

Data files: PAV-samples-publish2023-05-17_13-27.xlsx, TIS-samples-publish2023-05-17_15-05.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 22:19, Last updated: 18th Aug 2023 at 22:45

Flow Cytometry - Data Linked

IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: T cell signatures of bacterial control among M....

Organisms: No organisms

SOPs: P.SES-230405-V1_JP_Flow_Protocol.docx

Data files: AB-samples-publish2023-05-17_15-29.xlsx, ABP-samples-publish2023-05-17_15-30.xlsx, D.FCS-samples-publish2023-06-01_12-52.xlsx, D.FLOW-samples-publish2023-06-01_11-32.xlsx, TIS-samples-publish2023-05-17_15-05.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 22:23, Last updated: 5th Jun 2023 at 19:23

2 hidden items

View all 43 Assays

Showing 20 out of a possible 74 Data files Advanced Data files list for this Programme with search and filtering

D.FCS-samples-publish2023-06-01_12-52.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked

Download

Created: 5th Jun 2023 at 19:23, Last updated: 3rd Nov 2023 at 14:59

Views: 67, Downloads: 1

PAV-samples-publish2023-05-17_13-27.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 18th Aug 2023 at 22:45, Last updated: 3rd Nov 2023 at 14:59

Views: 69, Downloads: 1

D.FLOW-samples-publish2023-06-01_11-32.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Linked

Download

Created: 5th Jun 2023 at 19:18, Last updated: 3rd Nov 2023 at 14:59

Views: 60, Downloads: 1

All Metadata - CD8 Depletion.xlsx

IMPAcTB

All of the above metadata in one file

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: All Metadata

Download

Created: 24th Oct 2023 at 18:40, Last updated: 24th Oct 2023 at 21:32

Views: 239, Downloads: 2

BAC-samples-publish2023-10-11_14-35.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Bacterial Extraction - Metadata, DNA Extraction - Metadata

Download

Created: 19th Oct 2023 at 20:22, Last updated: 20th Oct 2023 at 21:43

Views: 207, Downloads: 3

TIS-samples-publish2023-10-11_14-11.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Bacterial Extraction - Metadata, DNA Extraction - Metadata, Flow Cytometry - Data Linked, Immunohistochemistry - Data Linked, Tissue Collection - Metadata

Download

Created: 19th Oct 2023 at 17:21, Last updated: 20th Oct 2023 at 21:43

Views: 181, Downloads: 1

A.SCXP-samples-publish2023-10-11_18-00.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Single Cell Expression Analysis - Data Linked

Download

Created: 13th Oct 2023 at 22:26, Last updated: 13th Oct 2023 at 22:54

Views: 163, Downloads: 1

PAV-2-samples-publish2023-10-11_13-11.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: PET/CT Scan - Data Linked, Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 12th Oct 2023 at 18:20, Last updated: 13th Oct 2023 at 17:24

Views: 168, Downloads: 2

A.DBMM-samples-publish2023-10-11_16-10.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Digitally Barcoded Mtb Matrix Analysis - Data A...

Download

Created: 12th Oct 2023 at 02:13, Last updated: 12th Oct 2023 at 03:04

Views: 125, Downloads: 2

DSEQ-BAC-samples-publish2023-10-11_15-51.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Digitally Barcoded Mtb Matrix Analysis - Data A..., Short Read Sequencing - Data Linked

Download

Created: 11th Oct 2023 at 23:13, Last updated: 12th Oct 2023 at 03:04

Views: 139, Downloads: 2

CD8 Depletion Digitally Barcoded MTB Matrix.xlsx

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Digitally Barcoded Mtb Matrix Analysis - Data A...

Download

Created: 12th Oct 2023 at 02:03, Last updated: 12th Oct 2023 at 03:04

Views: 120, Downloads: 1

DNA-BAC-samples-publish2023-10-11_14-51.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: DNA Extraction - Metadata, Short Read Sequencing - Data Linked

Download

Created: 11th Oct 2023 at 22:48, Last updated: 12th Oct 2023 at 03:04

Views: 171, Downloads: 1

DSEQ-TIS-samples-publish2023-10-11_15-50.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Short Read Sequencing - Data Linked, Single Cell Expression Analysis - Data Linked

Download

Created: 11th Oct 2023 at 22:57, Last updated: 12th Oct 2023 at 03:04

Views: 154, Downloads: 2

DNA-TIS-samples-publish2023-10-11_14-50.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: DNA Extraction - Metadata, Short Read Sequencing - Data Linked

Download

Created: 11th Oct 2023 at 21:43, Last updated: 12th Oct 2023 at 03:04

Views: 162, Downloads: 2

CD8 counts AFLOW

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry Analysis - Data Attached

Download

Created: 12th Oct 2023 at 02:39, Last updated: 12th Oct 2023 at 03:04

Views: 122, Downloads: 1

CD8 cytokine AFLOW

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry Analysis - Data Attached

Download

Created: 12th Oct 2023 at 02:40, Last updated: 12th Oct 2023 at 03:04

Views: 130, Downloads: 2

A.FLOW-samples-publish2023-10-11_16-45.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry Analysis - Data Attached

Download

Created: 12th Oct 2023 at 02:43, Last updated: 12th Oct 2023 at 03:04

Views: 132, Downloads: 2

AB-FCS-samples-publish2023-10-11_15-07.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry - Data Linked

Download

Created: 11th Oct 2023 at 23:15, Last updated: 12th Oct 2023 at 03:04

Views: 131, Downloads: 2

ABP-samples-publish2023-10-11_16-15.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry - Data Linked

Download

Created: 12th Oct 2023 at 02:22, Last updated: 12th Oct 2023 at 03:04

Views: 142, Downloads: 2

D.FLOW-samples-publish2023-10-11_16-20.xlsx

IMPAcTB

Batch sample publishing

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry - Data Linked, Flow Cytometry Analysis - Data Attached

Download

Created: 12th Oct 2023 at 02:34, Last updated: 12th Oct 2023 at 03:04

Views: 177, Downloads: 3

View all 74 Data files

Showing 20 out of a possible 38 SOPs Advanced SOPs list for this Programme with search and filtering

P.FOR-230503-V1_Barcoding-Whole-Genome-Sequencing-Protocol.docx

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Short Read Sequencing - Data Linked

Download

Created: 20th Oct 2023 at 17:51, Last updated: 20th Oct 2023 at 21:43

Views: 183, Downloads: 1

P.FOR-231020-V1_DBMM-Analysis-CD8.docx

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Digitally Barcoded Mtb Matrix Analysis - Data A...

Download

Created: 20th Oct 2023 at 17:53, Last updated: 20th Oct 2023 at 21:43

Views: 181, Downloads: 2

P.FLY-231011_Patient Visit CD8

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 11th Oct 2023 at 20:33, Last updated: 12th Oct 2023 at 03:04

Views: 151, Downloads: 2

P.FOR-231011_Bacterial Extraction

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Bacterial Extraction - Metadata

Download

Created: 11th Oct 2023 at 21:22, Last updated: 12th Oct 2023 at 03:04

Views: 142, Downloads: 2

P.FOR-230503-V1_Barcoding_Amplicon_Feb2023

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: DNA Extraction - Metadata, Short Read Sequencing - Data Linked

Download

Created: 11th Oct 2023 at 21:33, Last updated: 12th Oct 2023 at 03:04

Views: 161, Downloads: 3

P.FLY-230509-V1_CD8-NX-Protocol

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Flow Cytometry - Data Linked

Download

Created: 12th Oct 2023 at 02:25, Last updated: 12th Oct 2023 at 03:04

Views: 157, Downloads: 1

P.FLY-230911-V1_IHC-CD8 Depletion

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: Immunohistochemistry - Data Linked

Download

Created: 12th Oct 2023 at 02:49, Last updated: 12th Oct 2023 at 03:04

Views: 144, Downloads: 1

P.FLY-230523-V1_PET_CT_Imaging

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control...

Assays: PET/CT Scan - Data Linked

Download

Created: 12th Oct 2023 at 02:54, Last updated: 12th Oct 2023 at 03:04

Views: 153, Downloads: 1

P.SES-230405-V1_JP_Flow_Protocol.docx

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Flow Cytometry - Data Linked

Download

Created: 17th May 2023 at 22:44, Last updated: 17th May 2023 at 22:47

Views: 411, Downloads: 10

P.BOO-230324-V1_KC_Protocol

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: T cell signatures of bacterial control among M....

Assays: Patient Visit - Metadata, Tissue Collection - Metadata

Download

Created: 17th May 2023 at 22:46, Last updated: 17th May 2023 at 22:47

Views: 429, Downloads: 8

P.BOO-230324-V1_KC_Protocol

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

Download

Created: 27th Mar 2023 at 23:38, Last updated: 30th Mar 2023 at 00:45

Views: 319, Downloads: 7

P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protocol_vers1.0

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

Download

Created: 27th Mar 2023 at 23:35, Last updated: 30th Mar 2023 at 00:45

Views: 315, Downloads: 5

P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol_vers2.0

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

Download

Created: 27th Mar 2023 at 23:37, Last updated: 30th Mar 2023 at 00:45

Views: 318, Downloads: 8

P.BOO-230324-V1_2019_April_Bronchoscopy_Protocol_vers4.0

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

Download

Created: 27th Mar 2023 at 23:37, Last updated: 30th Mar 2023 at 00:45

Views: 314, Downloads: 6

P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_vers4.0

IMPAcTB

No description specified

Creator: Charles Demurjian

Submitter: Charles Demurjian

Investigations: IMPAcTB

Studies: Immune cells in bronchoalveolar lavage fluid of...

Assays: Patient Visit – Metadata, Tissue Collection - Metadata

Download

Created: 27th Mar 2023 at 23:38, Last updated: 30th Mar 2023 at 00:45

Views: 321, Downloads: 7

P.FLY-220824-V1_P---Immunohistochemistry-Analysis.docx

IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Immunohistochemistry – Data Linked

Download

Created: 17th Oct 2022 at 21:00

Views: 442, Downloads: 7

P.SHA-220824-V1_P---Clustering.docx

IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Clustering Analysis – Data Linked

Download

Created: 17th Oct 2022 at 20:58

Views: 437, Downloads: 6

P.SHA-220912-V1_Drop-seq_Alignment_Cookbook.pdf

IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: Single Cell Expression Analysis - Data Linked, Single Cell Expression Matrix Analysis – Data L...

Download

Created: 17th Oct 2022 at 20:56

Views: 467, Downloads: 7

P.SHA-220819-V1_SeqWellHughes.et.al.Master.Protocol.pdf

IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: DNA Extraction - Metadata, Library Creation – Metadata, Short Read Sequencing - Data Linked, Single Cell Sequencing – Data Linked

Download

Created: 17th Oct 2022 at 20:38

Views: 537, Downloads: 15

P.FLY-210708-V1_Hannah's-GentleMacs-Protocol-as-of-Sept-18.docx

IMPAcTB

No description specified

Creator: Jake Schissel

Submitter: Jake Schissel

Investigations: IMPAcTB

Studies: CD8+ lymphocytes are critical for early control..., Multimodal profiling of lung granulomas in maca...

Assays: Library Creation – Metadata, Tissue Collection - Metadata

Download

Created: 17th Oct 2022 at 20:37

Views: 493, Downloads: 7

4 hidden items

View all 38 SOPs

Showing 20 out of a possible 866 Samples Advanced Samples list for this Programme with search and filtering

PAV-220928FLY-4

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-82

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-84

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-91

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220928FLY-1

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220928FLY-2

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220928FLY-3

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-36

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-43

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-50

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-58

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-65

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-73

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-75

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220802FLY-49

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220802FLY-50

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-3

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-7

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-10

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

PAV-220805FLY-14

IMPAcTB

Type: PAV

Creators: None

Submitter: Jake Schissel

Created: 3rd Nov 2022 at 16:37

View all 866 Samples