Studies
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Submitter: Theresa Bender
Investigation: Consortium for Clinical Characterization of COV...
Assays: Instructions
Eine diagnostische Studie der Stufe 1 zur Entwicklung des SARS-CoV-2-ELISA. Ziel der Studie ist die Bestimmung von Sensitivität und Spezifität des Tests bei Probanden mit bekannter Erkrankung und bei Kontrollpersonen.
https://www.drks.de/drks_web/navigate.do?navigationId=trial.HTML&TRIAL_ID=DRKS00021166
Concrete is the second most consumed product by humans, after water. However, the production of cement, which is used as a binding material in concrete, causes more than 5% of anthropogenic CO2 emissions and has therefore a significant contribution to climate change and global warming. Due to increasing environmental awareness and international climate goals, there is a need for emission-reduced materials, that can replace conventional concrete in certain applications. One path to produce a solid, ...
Submitter: Jennifer Zehner
Investigation: 1 hidden item
Assays: Global pH monitoring_precipitation, Local pH monitoring Precipitation, Local pH monitoring dissolution, Optical microscopy for precipitation, Raman microspectroscopy
Submitter: Ulrich Sax
Investigation: Lean European Open Survey on SARS-CoV-2 Infecte...
Assays: No Assays
Submitter: Ulrich Sax
Investigation: Lean European Open Survey on SARS-CoV-2 Infecte...
Assays: No Assays
We examined whether such a lockdown could be intermitted with periods with normal social contact, without endangering the success of the strategy.
Submitter: Alexey Kolodkin
Investigation: Construction of differential equation model to ...
Submitter: Theresa Bender
Investigation: Consortium for Clinical Characterization of COV...
Submitter: Harald Kusch
Investigation: Further information collections on COVID-19
Assays: COVI-19 Übersicht
Submitter: Harald Kusch
Investigation: Further information collections on COVID-19
Assays: No Assays
Short Name: 04_stPanTr Title: Solanum tuberosum Pan-Transcriptome Description: Solanum tuberosum Pan-Transcriptome Raw Data: pISA Study creation date: 2019-10-22 pISA Study creator: Maja Zagorscak Principal investigator: Kristina Gruden License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_STRT
Assays: _A_01_GC_content-count, _A_02_cdhit_3cvs-GFFmerged, _A_03_components_3cvs-GFFmerged, _A_04_BUSCO_3cvs-GFFmerged, _A_05_MSA_3cvs-GFFmerged, _A_06_tr_rep-transrate, _A_07_Desiree-mapping, _A_08_centrifuge_3cvs-GFFmerged, _A_09_annotation-GFFmerged
Supplementary Information linked together
Submitter: Jurgen Haanstra
Investigation: Metabolism of HepG2 liver cancer cells
Assays: Cell counts and BCA Protein
Submitter: Jurgen Haanstra
Investigation: Metabolism of HepG2 liver cancer cells
Submitter: Jurgen Haanstra
Investigation: Metabolism of HepG2 liver cancer cells
Assays: Inhibition experiment for the effect of SSZ on HepG2 metabolism
A repository of causal cellular signalling statement
Submitter: Vasundra Toure
Investigation: WP1: Creation of an integrated and curated canc...
Assays: Causal Extraction from Reactome
A guidelines for the curation of molecular interactions causal statements.
Submitter: Vasundra Toure
Investigation: WP1: Creation of an integrated and curated canc...
Assays: MI2CAST curation guidelines
One pot cascade - pathway analysis for the purified Caulinobacter crescentus Weimberg pathway enzymes. Effect of co-factor recycling, removal of XLA, and optimisation on Xylose to aKG is studied.
https://jjj.bio.vu.nl/models/experiments/shen2020_fig3a/simulate https://jjj.bio.vu.nl/models/experiments/shen2020_fig3b/simulate https://jjj.bio.vu.nl/models/experiments/shen2020_fig3c/simulate https://jjj.bio.vu.nl/models/experiments/shen2020_fig3d/simulate
Submitter: Jacky Snoep
Investigation: Caulobacter crescentus Weimberg pathway
Assays: One pot cascade 10, One pot cascade 12, One pot cascade 13, One pot cascade 16
This study contains our single nuclei characterisation of whole hearts from Fzt.DU mice published in Cells.
Submitter: Markus Wolfien
Investigation: 1 hidden item
Submitter: Malte Herold
Investigation: SysMetEx - Dataset collection
Assays: Microscopy imaging, Proteomics rawdata, RNAseq rawdata
Submitter: Malte Herold
Investigation: SysMetEx - Dataset collection
Assays: Proteomics rawdata, RNAseq rawdata
Submitter: Malte Herold
Investigation: SysMetEx - Dataset collection
Assays: Proteomics rawdata, RNAseq rawdata
Supplemental files for the publication of the dataset collection.
Submitter: Malte Herold
Investigation: SysMetEx - Dataset collection
Initial rate kinetics for the purified Caulinobacter crescentus Weimberg pathway enzymes, including substrate dependence, and product inhibition.
Submitter: Jacky Snoep
Investigation: Caulobacter crescentus Weimberg pathway
Progress curves for the purified Caulinobacter crescentus Weimberg pathway enzymes. Each reaction is followed up to completion and then the next enzyme in the pathway is added, i.e. XDH-XLA-XAD-KDXD and finally KGSADH
Submitter: Jacky Snoep
Investigation: Caulobacter crescentus Weimberg pathway
Assays: Progress curve KDXD, Progress curve KGSADH, Progress curve XAD, Progress curve XDH, Progress curve XLA, Progress curves combined
Cell free extract - pathway analysis for Caulinobacter crescentus Weimberg pathway enzymes. Effect of co-factor recycling, and Mn2+ on Xylose to aKG conversion is studied.
The model is an extensio of PLM_67v3 with an additional an additional variable Temp in ODE 25. This change allows to simulated warm pulses that affect EC stability using COPASI.
Originally submitted to PLaSMo on 2014-03-10 13:16:25
Submitter: BioData SynthSys
Investigation: Urquiza Garcia, Uriel
Model that eliminates several light inputs. RVE8, NOX are incorporated. Individual representation of CCA1 and LHY. Several changes in conections and light inputs. Fogelmark reports eight parameter sets. This SBML file contains the first parameter set Related PublicationsFogelmark K, Troein C (2014). Rethinking transcriptional activation in the Arabidopsis circadian clock.. PLoS Comput Biology. Retrieved from: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003705Originally ...
Submitter: BioData SynthSys
Investigation: Urquiza Garcia, Uriel
Assays: F2014.1 - PLM_1030, version 1
To map genome wide transcriptome responses in Atlantic cod PCLS treated with BaP and EE2. See Yadetie et al., 2018.
Submitter: Fekadu Yadetie
Investigation: 1 hidden item
Study: _S_03_stCuSTr Short Name: 03_stCuSTr Title: Solanum tuberosum Cultivar-Specific Transcriptomes Description: Solanum tuberosum Cultivar-Specific Transcriptomes Raw Data: ../_S_01_sequences/, ../_S_02_denovo/ pISA Study creation date: 2019-10-22 pISA Study creator: Maja Zagorscak, Marko Petek, Ziva Ramsak Principal investigator: Kristina Gruden License: MIT Sharing permission: Public Upload to FAIRDOMHub: Yes
RELATED FILES: /reports/README.MD https://fairdomhub.org/documents/346 /_STUDY_METADATA.TXT ...
Submitter: Maja Zagorscak
Investigation: _I_STRT
Assays: _A_01_evigene, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_03.1_filtering, _A_03.2_components, _A_04_TransRate, _A_05_BUSCO