SEEK ID: https://fairdomhub.org/assays/1311
Modelling analysis
Projects: CML for thermophysical properties of mixtures
Investigation: Deep Eutectic Solvents
Study: Meta-analysis of viscosity of aqueous deep eutectic solvents and their components
Assay position:
Biological problem addressed: Model Analysis Type
Organisms: No organisms
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Created: 10th Jul 2020 at 13:19
Last updated: 24th Jul 2020 at 13:53
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Projects: Simulation Foundries, CML for thermophysical properties of mixtures, Test Project (dummy), Towards Reproducible Enzyme Modeling
Institutions: University of Stuttgart, Karlsruhe Institute of Technology (KIT)
https://orcid.org/0000-0001-9119-1778Expertise: enzyme kinetics, enzymes, Enzymatic reactions, biochemical enzyme characterization, Biochemistry, molecular simulation, molecular modeling, Programming, Bioinformatics, Computational Biology
Tools: Gromacs, Python, Molecular Dynamics, bash, Biochemistry, Bioinformatics, Biochemistry and protein analysis, Enzyme assay, enzyme kinetics, isothermal titration calorimetry, dynamic light scattering, Spectrophotometry
Polyglot European Scientist. I thrive working in interdisciplinary environments combining the study of enzyme reactions and mechanisms with bioinformatics, molecular modelling, automated data analysis and data stewardship.
This is a collection of deep eutectic solvent (DES) experimental and simulation data that is stored in CML format and analysed using gradient boosting decision trees.
Submitter: Gudrun Gygli
Studies: Choline chloride:glycerol:water mixtures in CML, Meta-analysis of viscosity of aqueous deep eutectic solvents and their c...
Assays: CML processing and analysis, VFT and Arrhenius Modelling
Snapshots: No snapshots
A meta-analysis of the impact of water content and temperature on the viscosities of four deep eutectic solvents (glyceline, reline, DEAG, DEACG), their components (choline chloride, urea, glycerol, ethylene glycol), methanol, and pure water was performed. We analyzed the viscosity data by an automated workflow, using Arrhenius and Vogel–Fulcher–Tammann-Hesse models.
Snapshots: Snapshot 1
Python script wrapping up (executing) all the steps of the workflow the user enters in it. Together with "names.py" this script requires input files to be located in a folder called "input" in the same directory.
Creators: Gudrun Gygli, Juergen Pleiss, Xinmeng Xu
Submitter: Gudrun Gygli
Relationship type: Not specified
Investigations: Deep Eutectic Solvents
Studies: Meta-analysis of viscosity of aqueous deep eute...
Assays: VFT and Arrhenius Modelling
Input data (viscosities, in .csv format) for the modelling workflow, collected from literature, see associated publication for details.
Creators: Gudrun Gygli, Xinmeng Xu, Juergen Pleiss
Submitter: Gudrun Gygli
Relationship type: Not specified
Investigations: Deep Eutectic Solvents
Studies: Meta-analysis of viscosity of aqueous deep eute...
Assays: VFT and Arrhenius Modelling
Resulting data from the modelling workflow, see associated publication.
Creators: Gudrun Gygli, Xinmeng Xu, Juergen Pleiss
Submitter: Gudrun Gygli
Relationship type: Not specified
Investigations: Deep Eutectic Solvents
Studies: Meta-analysis of viscosity of aqueous deep eute...
Assays: VFT and Arrhenius Modelling
The modelling workflow used on the input data, which leads to the results, see associated publication.
Creators: Gudrun Gygli, Juergen Pleiss, Xinmeng Xu
Submitter: Gudrun Gygli
Relationship type: Not specified
Investigations: Deep Eutectic Solvents
Studies: Meta-analysis of viscosity of aqueous deep eute...
Assays: VFT and Arrhenius Modelling
Python script allowing the user to define the names of the input files to be used. Together with "wrapper.py" this script requires input files to be located in a folder called "input" in the same directory.
Creators: Gudrun Gygli, Juergen Pleiss, Xinmeng Xu
Submitter: Gudrun Gygli
Relationship type: Not specified
Investigations: Deep Eutectic Solvents
Studies: Meta-analysis of viscosity of aqueous deep eute...
Assays: VFT and Arrhenius Modelling
Instructions and details on the data analysis workflow.
Creators: Gudrun Gygli, Juergen Pleiss, Xinmeng Xu
Submitter: Gudrun Gygli
Investigations: Deep Eutectic Solvents
Studies: Meta-analysis of viscosity of aqueous deep eute...
Assays: VFT and Arrhenius Modelling