Build the chemical defensome gene list for 5 fish: Zebrafish (Danio rerio), Atlantic cod (Gadus morhua), medaka (Oryzias latipes), Atlantic killifish (Fundulus heteroclitus) and stickleback (Gasterosteus aculeatus). Source code and relevant files can be found on GitHub: https://github.com/zhxiaokang/fishDefensome/tree/main/defensomeGenes
SEEK ID: https://fairdomhub.org/assays/1378
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Projects: Systems toxicology of Atlantic cod
Investigation: hidden item
Study: The chemical defensome of fish
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Biological problem addressed: Stress response/Adaptation
Organisms: No organisms
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Jared V. Goldstone; John Stegeman
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Created: 16th Dec 2020 at 20:16
Last updated: 20th Apr 2021 at 12:50
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Projects: Systems toxicology of Atlantic cod, DigiSal
Institutions: University of Bergen
Expertise: exposure studies, ex vivo, in vivo, genome mining
Projects: Systems toxicology of Atlantic cod
Institutions: University of Bergen
https://orcid.org/0000-0003-4110-0748Projects: Systems toxicology of Atlantic cod
Institutions: University of Bergen
https://orcid.org/0000-0003-4684-317XThe goal of the dCod-project is to combine the competencies in environmental toxicology, biology, bioinformatics and mathematics across the traditional department boundaries, to create a deeper understanding of cods' adaptations and reactions to stressors in the environment. Building on the thoroughly studies and mapping of the cod genome at UiO and the long research traditions on cod at the Department of Biology at UiB, the dCod project will expand our knowledge with methods based on genomics; ...
Projects: Systems toxicology of Atlantic cod
Web page: http://dcod.no
Coastal zones and oceans constitute an essential fundament for Norway’s history as well as current economy, providing ecosystem services for fisheries, aquaculture, transport, tourism, and recreation. The petroleum activities in Norwegian waters have been crucial for Norway’s financial growth and in financing the Norwegian welfare state. As the pressure on the oceans continuously increases, both the petroleum industry and the seafood industries have acknowledged that awareness and actions are ...
Programme: dCod 1.0: decoding systems toxicology of cod
Public web page: http://www.uib.no/en/dcod
Organisms: Gadus morhua
Interspecies differences in sensitivity to chemical exposures pose a great challenge in toxicological risk assessments. How an organism copes with chemicals is largely determined by the genes and proteins that collectively function to defend against, detoxify and eliminate chemical stressors. This integrative network includes receptors and transcription factors, biotransformation enzymes, transporters, antioxidants, and metal- and heat-responsive genes, and is collectively known as the chemical ...
Submitter: Sofie Söderström
Investigation: 1 hidden item
Assays: Chemical defensome genes for five fish species, Exposure response of defensome genes, Expression of defensome genes in early development of fish
Snapshots: Snapshot 1
Creators: Xiaokang Zhang, Marta Eide, Odd André Karlsen, Inge Jonassen, Anders Goksøyr, Jared V. Goldstone; John Stegeman
Submitter: Xiaokang Zhang
DOI: 10.15490/fairdomhub.1.datafile.3958.1
Relationship type: Not specified
Investigations: 1 hidden item
Studies: The chemical defensome of fish
There are four datasheets in the Excel file: 1. Gene pattern and the corresponding category (the gene list is then divided into the other three datasheets); 2. These gene names (patterns) can be directly followed by either a letter or a number; 3. These gene names (patterns) should be directly followed by a letter; 4. These gene names (patterns) should be directly followed by a number.
Creators: Xiaokang Zhang, Marta Eide, Odd André Karlsen, Inge Jonassen, Anders Goksøyr, Jared V. Goldstone; John Stegeman
Submitter: Xiaokang Zhang
DOI: 10.15490/fairdomhub.1.datafile.3957.1
Relationship type: Not specified
Investigations: 1 hidden item
Studies: The chemical defensome of fish
Creators: Xiaokang Zhang, Marta Eide, Odd André Karlsen, Inge Jonassen, Anders Goksøyr, Jared V. Goldstone; John Stegeman
Submitter: Xiaokang Zhang
DOI: 10.15490/fairdomhub.1.datafile.3956.1
Relationship type: Not specified
Investigations: 1 hidden item
Studies: The chemical defensome of fish
Supplementary Tables 1-4 for manuscript "The chemical defensome of five model teleost fish"
Investigations: 1 hidden item
Studies: The chemical defensome of fish
Supplementary Table1 and Table2 for manuscript "The chemical defensome of fish"
Creators: Xiaokang Zhang, Marta Eide, Inge Jonassen, Anders Goksøyr, Odd André Karlsen, Jared V. Goldstone; John Stegeman
Submitter: Xiaokang Zhang
Investigations: 1 hidden item
Studies: The chemical defensome of fish