BERGEN PUBLICATION Location: UiB Duration: 14 days, injections at day 0 and day 7 Sampling dates: 29-30 March 2017 Compounds tested: Polycyclic aromatic hydrocarbons (PAHs)/ Per- and polyfluoroalkyl substances (PFAS) No. of test groups: 10 No. of fish per group: 21-22 No. of dead fish:
Aim: *To investigate biological responses in Atlantic cod ( Gadus morhua) after in vivo exposure to a mixture of PAHs and PFASs, either singly or combined, at low (1x) or high (20x) doses. *PFAS concentrations were determined in cod liver, and PAH metabolites were measured in bile as a biomarker of PAH exposure. *Various biomarkers were determined at transcript and protein levels in the liver, and lipidomics and proteomics analyses were performed on liver tissue to study responses on lipid metabolism.
SEEK ID: https://fairdomhub.org/studies/753
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Projects: Systems toxicology of Atlantic cod
Study position:
Experimentalists: Karina Dale, Fekadu Yadetie, Roger Lille-Langøy, Anders Goksøyr, Odd André Karlsen, Essa Khan, Ane Haarr, Zhanna Tairova, Mette Bjørge Müller, Jan Ludvig Lyche
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Projects: Systems toxicology of Atlantic cod
Institutions: University of Bergen
Expertise: Molecular Biology
The goal of the dCod-project is to combine the competencies in environmental toxicology, biology, bioinformatics and mathematics across the traditional department boundaries, to create a deeper understanding of cods' adaptations and reactions to stressors in the environment. Building on the thoroughly studies and mapping of the cod genome at UiO and the long research traditions on cod at the Department of Biology at UiB, the dCod project will expand our knowledge with methods based on genomics; ...
Projects: Systems toxicology of Atlantic cod
Web page: http://dcod.no
Coastal zones and oceans constitute an essential fundament for Norway’s history as well as current economy, providing ecosystem services for fisheries, aquaculture, transport, tourism, and recreation. The petroleum activities in Norwegian waters have been crucial for Norway’s financial growth and in financing the Norwegian welfare state. As the pressure on the oceans continuously increases, both the petroleum industry and the seafood industries have acknowledged that awareness and actions are ...
Programme: dCod 1.0: decoding systems toxicology of cod
Public web page: http://www.uib.no/en/dcod
Organisms: Gadus morhua
Includes physiological informations regarding the fish samples: Weight, length, gender, date sampled, comments regarding physical apperance, in addition to calculations of condition factor (K), hepatosomatic index (HSI) and gonadosomatic index (GSI).
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Enzyme activity of the oxidative stress enzymes glutathione S-transferase (Gst) and catalase (Cat) measured in cod liver
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: Enzyme activities catalase and glutathione S-tr..., In vivo-1 biometrics
Snapshots: No snapshots
Concentration of the egg yolk precursor protein vitellogenin in cod plasma
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: In vivo-1 biometrics, Vitellogenin concentrations in cod plasma - IV1
Snapshots: No snapshots
Gene expression of cyp1a and acox1 measured by qPCR in liver of Atlantic cod exposed to PAHs and PFASs
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: In vivo-1 biometrics, Liver gene expression cyp1a and acox1
Snapshots: No snapshots
Semi-quantitative determination of Cyp1a protein amount in cod liver, using the ELISA method.
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: Cyp1a protein amount, In vivo-1 biometrics
Snapshots: No snapshots
Measurement of DNA fragmentation using the Comet Assay, in white blood cells of Atlantic cod exposed to PAHs and PFASs
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: Comet assay, In vivo-1 biometrics
Snapshots: No snapshots
Measurements of PAH metabolites in bile (1-OH-napthalene, 2-OH-naphthalene, 1-OH-phenanthrene, 1-OH-pyrene) and PFAS compounds in liver (PFOS, PFOA, PFNA, PFTrDa) in Atlantic cod exposed to mixtures of PAHs and PFASs.
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: In vivo-1 biometrics, PAH and PFAS chemistry
Snapshots: No snapshots
Some results from proteomics analyses of cod liver exposed to PAH and PFAS
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Organisms: Gadus morhua
SOPs: No SOPs
Data files: Protein quantification data
Snapshots: No snapshots
Results from lipidomics analyses performed in cod liver microsomes of cod exposed to PAH and PFAS mixtures.
Submitter: Karina Dale
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Data file containing protein ID and pre-processed proteomic data, in addition to protein groups (peptide counts etc) determined in cod liver of cod exposed to PAH and PFAS mixtures.
Creator: Karina Dale
Submitter: Karina Dale
Results of lipid species (expressed in pmol) determined in cod liver microsomes exposed to PAH and PFAS
Creators: Karina Dale, Alejandra Gilabert
Submitter: Karina Dale
Concentrations of PFAS in liver and PAH metabolites in bile of cod exposed to mixtures of PAHs and PFASs
Creator: Karina Dale
Submitter: Karina Dale
Tail intensities (%) measured by the Comet Assay as indication of DNA fragmentation in blood cells of Atlantic cod exposed to PAHs and PFASs
Creator: Karina Dale
Submitter: Karina Dale
Measured in cod liver by the ELISA method, in Atlantic cod exposed to PAHs and PFASs
Creator: Karina Dale
Submitter: Karina Dale
Mean normalized expression (MNE) levels of cyp1a and acox1 measured in liver of Atlantic Cod exposed to PAH and PFAS mixtures
Creator: Karina Dale
Submitter: Karina Dale
Investigations: 1 hidden item
Studies: PAH/PFAS mixture toxicity in vivo
Assays: Liver gene expression (qPCR)
Concentrations of the egg yolk precursor protein vitellogenin (Vtg) in cod plasma - 10 samples from each exposure group, IV1 experiment
Creator: Karina Dale
Submitter: Karina Dale
Investigations: 1 hidden item
Studies: PAH/PFAS mixture toxicity in vivo
Assays: Vitellogenin in plasma
Measured in liver of Atlantic cod exposed to PAHs and PFASs
Creator: Karina Dale
Submitter: Karina Dale
Investigations: 1 hidden item
Studies: PAH/PFAS mixture toxicity in vivo
Assays: Enzyme activity assays
Biometrics of IV1 fish exposed to PAH and PFAS
Creator: Karina Dale
Submitter: Karina Dale
Investigations: 1 hidden item
Studies: PAH/PFAS mixture toxicity in vivo and 1 hidden item
Assays: Chemical analyses, Comet Assay, ELISA Cyp1a liver, Enzyme activity assays, Fish biometrics in vivo I, Liver gene expression (qPCR), Vitellogenin in plasma and 3 hidden items