This compares the five conditions Control at 24 hours, Methanobrevibacter smithii (MBS) at 4 and 24 hours, Methanosphaera stadtmanae (MSS) at 4 and 24 hours in a joint model. The respective conditions are abbreviated Control_24h, MBS_4h, MBS_24h, MSS_4h, MSS_24h
SEEK ID: https://fairdomhub.org/assays/2694
Modelling analysis
Projects: Archaean stimulation of human primary PBMCs and PBMCs monocytes
Investigation: Illumina RNA sequencing of archaean stimulated human PBMCs
Study: Differential expression
Assay position:
Biological problem addressed: Model Analysis Type
Organisms: No organisms
Export PNG

Views: 25
Created: 22nd Jul 2025 at 09:23
Last updated: 29th Sep 2025 at 12:24

This item has not yet been tagged.
Related items
Projects: Group Data Science, Group Microbial Interface Biology, Core Facility Fluorescence Cytometry, Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition, Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis, Methylation differences during respiratory infection, Lipid droplet formation and dynamics in murine macrophages, Implementation of Nanopore Sequencing for Detection of Treatment Induced Transcriptomic and Epitranscriptomic Changes in Leukaemic Tumour Models, Revisiting mutational resistance to ampicillin and cefotaxime in Haemophilus influenzae, OMICS of vascular smooth muscle cells under oxidative stress, Lung health related PGS and GWAS, Archaean stimulation of human primary PBMCs and PBMCs monocytes
Institutions: Forschungszentrum Borstel

Expertise: Bioinformatics, Genomics, Transcriptomics
Projects: Group Data Science, Group Microbial Interface Biology, Core Facility Fluorescence Cytometry, Targeting the immunoproteasome: Analyzing the biological effects of specific versus pan inhibition, Macrophage and neutrophil redox proteome in infection with Mycobacterium tuberculosis, Methylation differences during respiratory infection, Lipid droplet formation and dynamics in murine macrophages, OMICS of vascular smooth muscle cells under oxidative stress, Lung health related PGS and GWAS, Archaean stimulation of human primary PBMCs and PBMCs monocytes
Web page: https://fz-borstel.de
Organisms: Not specified
Illumina RNA Sequencing of human PBMCs of 9 donors stimulated with two archaea, measured after 4 and 24 hours as well as without stimulation after 24 hours as control
Submitter: Inken Wohlers
Studies: Differential expression, Transcriptome profiling
Assays: Comparison of all conditions, Expression profiling with heatmaps and PCA
Snapshots: No snapshots
Submitter: Inken Wohlers
Investigation: Illumina RNA sequencing of archaean stimulated ...
Assays: Comparison of all conditions
Snapshots: No snapshots
Investigations: Illumina RNA sequencing of archaean stimulated ...
Studies: Differential expression
Assays: Comparison of all conditions
Investigations: Illumina RNA sequencing of archaean stimulated ...
Studies: Differential expression
Assays: Comparison of all conditions
Investigations: Illumina RNA sequencing of archaean stimulated ...
Studies: Differential expression
Assays: Comparison of all conditions
Investigations: Illumina RNA sequencing of archaean stimulated ...
Studies: Differential expression
Assays: Comparison of all conditions