Assays

What is an Assay?

1454 Assays visible to you, out of a total of 2472

Genome Alignment - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Molecular origins of mutational spectra produce...

Organisms: No organisms

SOPs: P.ESS-230303-V1_Data-processing-(alignment).docx

Data files: A.ALN-samples-publish2023-03-24_14-05.xlsx, D.SEQ-samples-publish2023-03-24_13-17.xlsx

Snapshots: No snapshots

Created: 7th Mar 2023 at 20:25, Last updated: 14th Apr 2025 at 18:27

Flow Cytometry Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Flow.docx

Data files: A.FLOW-samples-publish2023-05-16_12-02.xlsx, D.FLOW-samples-publish2023-05-16_11-54.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 21:01, Last updated: 14th Apr 2025 at 18:24

Flow Cytometry - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Flow.docx

Data files: AB-samples-publish2023-05-16_12-07.xlsx, ABP-samples-publish2023-05-16_12-11.xlsx, CEL-samples-publish2023-05-16_11-33.xlsx, D.FLOW-samples-publish2023-05-16_11-54.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 21:00, Last updated: 14th Apr 2025 at 18:23

Device Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Confocal-imaging.docx

Data files: D.IMG-samples-publish2023-05-16_11-46.xlsx, OOC-samples-publish2023-05-16_11-38.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:58, Last updated: 14th Apr 2025 at 18:22

Microfluidic Device Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Impact of fibrinogen, fibrin thrombi and thromb...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-230131-V1_OOC-protocol-device-and-network...

Data files: CEL-samples-publish2023-05-16_11-33.xlsx, OOC-samples-publish2023-05-16_11-38.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:57, Last updated: 14th Apr 2025 at 18:21

Comet Chip - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_Cell-Culture.docx, P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: CEL-samples-publish2023-09-19_13-11.xlsx, D.IMG-samples-publish2023-09-13_12-43.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 14th Apr 2025 at 18:11

Comet Chip Analysis - Data Attached

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_In-Vivo-Comet-Assay-Protocol.docx

Data files: Figure 2B MMS 211203.pzfx, Figure 3A hAAG 211201_Enzymes.pzfx, Figure 3B MMS FPG.pzfx, Figure 4B.pzfx, Figure 5A Liver Time Course.pzfx, Figure 5B Lung time course.pzfx, Figure 5C Kidney NDMA Time Course.pzfx, Figure 6A Liver hAAG.pzfx, Figure 6B Liver Fpg.pzfx, Figure 6C-D Lung with Enzymes.pzfx, Figure 6E-F In_vivo_NDMA_Kidney w Enzymes copy...., Figure S2 MEFs and HepG2.pzfx, Figure S5A In_vivo_NDMA_Pancreas.pzfx, Figure S5B NDMA Spleen.pzfx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:15, Last updated: 14th Apr 2025 at 18:09

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230912-V1_MMS-and-NDMA-TIS.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: MUS-samples-publish2023-09-13_11-48.xlsx, TIS-samples-publish2023-09-13_12-27.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:14, Last updated: 14th Apr 2025 at 18:06

Chemical Challenge - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Novel In Vivo CometChip Reveals NDMA-Induced DN...

Organisms: No organisms

SOPs: P.ENG-230913-V1_Chemicals-and-Reagents.docx, P.ENG-230913-V1_In-Vivo-Comet-Chip---MUS.docx

Data files: CHM-samples-publish2023-09-13_11-34.xlsx, MUS-samples-publish2023-09-13_11-48.xlsx

Snapshots: No snapshots

Created: 13th Sep 2023 at 16:13, Last updated: 14th Apr 2025 at 18:05

Mass Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: IFN-γ- GranzymeB + Natural killer cells are ind...

Organisms: No organisms

SOPs: P.SED-241121-V1_Mass-Cytometry-Protocol.docx

Data files: samples-publish_250327_AB.xlsx, samples-publish_250327_ABP.xlsx, samples-publish_250327_D.CYTOF.xlsx, samples-publish_250327_TIS.xlsx

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:51, Last updated: 28th Mar 2025 at 21:51

Mass Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: IFN-γ- GranzymeB + Natural killer cells are ind...

Organisms: No organisms

SOPs: P.SED-241121-V1_Mass-Cytometry-Protocol.docx

Data files: samples-publish_250327_A.CYTOF.xlsx, samples-publish_250327_D.CYTOF.xlsx

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:52, Last updated: 28th Mar 2025 at 21:51

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systematic deconstruction of myeloid cell signa...

Organisms: No organisms

SOPs: No SOPs

Data files: Systematic Granuloma - All Metadata_v1.xlsx

Snapshots: No snapshots

Created: 28th Mar 2025 at 17:10, Last updated: 28th Mar 2025 at 17:26

Electrochemical Sensor Testing - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Reversible Electrochemical Sensor for NDMA: Lev...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish250325_D.SNSR.xlsx, samples-publish250325_SNSR.xlsx

Snapshots: No snapshots

Created: 4th Mar 2025 at 20:49, Last updated: 25th Mar 2025 at 17:48

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Reversible Electrochemical Sensor for NDMA: Lev...

Organisms: No organisms

SOPs: No SOPs

Data files: MIP_AllMetadata.xlsx

Snapshots: No snapshots

Created: 25th Mar 2025 at 17:44, Last updated: 25th Mar 2025 at 17:48

Atomic Force Microscopy - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Reversible Electrochemical Sensor for NDMA: Lev...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish250325_D.IMG.xlsx

Snapshots: No snapshots

Created: 4th Mar 2025 at 20:48, Last updated: 25th Mar 2025 at 17:44

Chemical Simulations - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Reversible Electrochemical Sensor for NDMA: Lev...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish250325_CHM.xlsx, samples-publish250325_D.SIM.xlsx

Snapshots: No snapshots

Created: 4th Mar 2025 at 20:47, Last updated: 25th Mar 2025 at 17:30

Sensor Creation - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Reversible Electrochemical Sensor for NDMA: Lev...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish250325_CHM.xlsx, samples-publish250325_SNSR.xlsx

Snapshots: No snapshots

Created: 4th Mar 2025 at 20:44, Last updated: 25th Mar 2025 at 17:28

Chemical Synthesis - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Reversible Electrochemical Sensor for NDMA: Lev...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish250325_CHM.xlsx

Snapshots: No snapshots

Created: 4th Mar 2025 at 20:44, Last updated: 25th Mar 2025 at 17:25

All Metadata

Cancer Systems Biology Consortium (CSBC)

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: CSBC

Study: Validation and quantification of peptide antige...

Organisms: No organisms

SOPs: No SOPs

Data files: SureQuant - AllMetadata.xlsx

Snapshots: No snapshots

Created: 21st Mar 2025 at 15:08, Last updated: 21st Mar 2025 at 15:10

SureQuant Analysis - Data Linked

Cancer Systems Biology Consortium (CSBC)

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: CSBC

Study: Validation and quantification of peptide antige...

Organisms: No organisms

SOPs: P.WHI-250319-V1_SureQuant_Protocol.pdf

Data files: samples-publish250319_A.MSP.xlsx, samples-publish250319_D.MSP.xlsx

Snapshots: No snapshots

Created: 19th Mar 2025 at 17:55, Last updated: 19th Mar 2025 at 19:54

ImmunoPeptideomics - Data Linked

Cancer Systems Biology Consortium (CSBC)

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: CSBC

Study: Validation and quantification of peptide antige...

Organisms: No organisms

SOPs: P.WHI-250319-V1_SureQuant_Protocol.pdf

Data files: samples-publish250319_CEL.xlsx, samples-publish250319_CHM.xlsx, samples-publish250319_D.MSP.xlsx

Snapshots: No snapshots

Created: 19th Mar 2025 at 17:54, Last updated: 19th Mar 2025 at 19:49

Sample Processing - Metadata

Cancer Systems Biology Consortium (CSBC)

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: CSBC

Study: Validation and quantification of peptide antige...

Organisms: No organisms

SOPs: P.WHI-250319-V1_SureQuant_SampleProcessing.docx

Data files: samples-publish250319_CEL.xlsx, samples-publish250319_TIS.xlsx

Snapshots: No snapshots

Created: 19th Mar 2025 at 17:53, Last updated: 19th Mar 2025 at 19:25

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - Training Data.xlsx, All Metadata - Validation Data.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:37, Last updated: 5th Feb 2025 at 22:49

PCR: Validation Data - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241121-V1_qPCR-Protocol.docx

Data files: 111224_PCR.xlsx, samples-publish_KPRF_D.PCR.xlsx, samples-publish_KPRF_SAS_RNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:33, Last updated: 5th Feb 2025 at 22:46

Bacterial Survivability Restriction Assay: Validation Data - Data Attached

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_BSRA-Protocol.docx

Data files: 111224_BRSA.xlsx, samples-publish_KPRF_SAS_BAC.xlsx, samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_D.BSRA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:34, Last updated: 5th Feb 2025 at 22:44

Gene Expression Analysis: Validation Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241121-V1_RNAseq-Analysis-Protocol.docx

Data files: samples-publish_KPRF_SAS_A.GEX.xlsx, samples-publish_KPRF_SAS_D.SEQ.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:36, Last updated: 5th Feb 2025 at 22:25

Short Read Sequencing: Validation Data - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_RNAseq-Protocol.docx

Data files: samples-publish_KPRF_SAS_D.SEQ.xlsx, samples-publish_KPRF_SAS_DNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:36, Last updated: 5th Feb 2025 at 21:48

Library Prep: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_RNAseq-Protocol.docx

Data files: samples-publish_KPRF_SAS_DNA.xlsx, samples-publish_KPRF_SAS_RNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:35, Last updated: 5th Feb 2025 at 20:46

RNA Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_RNAseq-Protocol.docx

Data files: samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_RNA.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:33, Last updated: 5th Feb 2025 at 20:00

Cell Extraction: Validation Data - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Systems-level computational translation of mous...

Organisms: No organisms

SOPs: P.SAS-241120-V1_Bacterial-culture-protocol.docx, P.SAS-241120-V1_Cell-culture-protocol.docx

Data files: samples-publish_KPRF_SAS_BAC.xlsx, samples-publish_KPRF_SAS_CEL.xlsx, samples-publish_KPRF_SAS_MUS.xlsx

Snapshots: No snapshots

Created: 5th Feb 2025 at 18:30, Last updated: 5th Feb 2025 at 19:47

Assays

Filters ×

Filters