Assays
What is an Assay?Filters
RNAi Screen of 100 candidate genes predicted to be involved in mitotic chromosome condensation. MIHCSME template example for IDR0002 dataset.
Submitter: Rohola Hosseini
Assay type: high content screen of cells treated with library of siRNAs
Technology type: fluorescence microscopy
Investigation: Minimal Information for High Content Screening ...
Study: MIHCSME templates
Compound screen on HepG2 CHOP-GFP reporter, to measure CHOP-GFP protein induction upon treatment with compounds. Template and associated files describe High Content Screening experimental data that conform to the MIHCSME specification.
Submitter: Rohola Hosseini
Assay type: high content screen of cells in treated with a compound library
Technology type: Confocal microscopy
Investigation: Minimal Information for High Content Screening ...
Study: MIHCSME templates
Compound screen on 13 HepG2 -GFP reporter lines, to measure GFP protein induction, and cell death induction. Template and associated files describe High Content Screening experimental data that conform to the MIHCSME specification.
Submitter: Rohola Hosseini
Assay type: high content screening
Technology type: Confocal Laser Scanning Microscopy (CLSM)
Investigation: Minimal Information for High Content Screening ...
Study: MIHCSME templates
The statistical analysis was performed in a jupyter notebook. This notebook contains the commands for all performed analyses (Statistical_analysis_of_FAIR_citations.ipynb)
The Bayesian Estimation Superseeds the t Test (BEST) method of Kruschke 2013 was used for the Bayesian significance testing. The method was implemented in a python class together with visualization and distributional analysis methods (BEST_method_python_Kruschke2012.py). Also the bayesian multiple comparison analysis can be ...
Submitter: Sebastian Höpfl
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Submitter: Vincent Wagner
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
The experimental data of Midazolam, OH-Midazolam, Caffein, Codeine, Norcodeine, Codein-6Glucuronide, Morphine-3Glucuronide and Morphine was analyzed via a Bayesian uncertainty quantification. An underlying model describing the bolus injection, followed by the exponential decay was written in sbml and a PEtab problem was created. The sampling and ensemble creation was conducted with the python toolbox pyPESTO.
For further details, please take a look at the methods section of the paper.
Submitter: Sebastian Höpfl
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Study: 1 hidden item
Submitter: Markus Wolfien
Biological problem addressed: Gene Expression
Investigation: Disparate immune responses lead to varied outco...
Study: Single nuclei data analysis
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
The experimental data of Midazolam, OH-Midazolam, Caffein, Codeine, Norcodeine, Codein-6Glucuronide, Morphine-3Glucuronide and Morphine was analyzed via a Bayesian uncertainty quantification. An underlying model describing the bolus injection, followed by the exponential decay was written in sbml and a PEtab problem was created. The sampling and ensemble creation was conducted with the python toolbox pyPESTO.
For further details, please take a look at the methods section of the paper.
Submitter: Sebastian Höpfl
Biological problem addressed: Model Analysis Type
Investigation: 1 hidden item
Stained sections were digitalized using a whole slide scanner (L11600, Hamamatsu, Ja-pan) equipped with the NDP.view2Plus Image viewing software (Version U12388-02).
- MNT-021_J-20-0152_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
- MNT-022_J-20-0154_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
- MNT-023_J-20-0156_HE_LLL(green), RML(red), RSL (black), ICL(yellow)_MAA_003 > Control
- MNT-024_J-20-0158_HE_LLL(green), RML(red), RSL (black), ...
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Mohamed Albadry
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Jana Kalvelage
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Jake Schissel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: IMPAcTB
Submitter: Meina Neumann-Schaal
Assay type: Metabolite Profiling
Technology type: Liquid Chromatography Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Submitter: Sarah Kirstein
Assay type: Experimental Assay Type
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
Harvest optical densites and methods of transcriptom, proteom and metabolom samples for all tested substrat conditions.
Submitter: Meina Neumann-Schaal
Assay type: Experimental Assay Type
Technology type: Cultivation experiment
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS
All flux balance analyses of the stoichiometric model
Submitter: Julia Koblitz
Biological problem addressed: Modelling analysis
Investigation: Systems biology investigation of aromatic compo...
Study: Metabolic Modelling
All files for metabolic modeling using the Metano toolbox, including the scenarios and flux balance analyses.
Submitter: Julia Koblitz
Biological problem addressed: Model Analysis Type
Investigation: Systems biology investigation of aromatic compo...
Study: Metabolic Modelling
Submitter: Patrick Becker
Assay type: Transcriptomics
Technology type: Rna-seq
Investigation: Systems biology investigation of aromatic compo...
Study: Experimental multi-OMICS