Assays

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1641 Assays visible to you, out of a total of 2667

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:26, Last updated: 13th Jul 2026 at 17:39

Library Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:27, Last updated: 13th Jul 2026 at 17:35

Soluble protein fraction of clonal enrichment culture BzS1 during growth with toluene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Peaklist files (.mgf) and mascot search files are provided per analysis. Each sample replicate was separated by gel electrophoresis and subdivided into 8 gel-slices. These were subjected to in-gel digest and LC ESI-iontrap MS/MS analyses.

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Shotgun proteomics, toluene, Soluble protein fraction, toleune

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:43, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:38, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with toluene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, toluene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:39, Last updated: 13th Jul 2026 at 08:18

Soluble protein fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Shotgun proteomics, benzense, Soluble protein fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:42, Last updated: 13th Jul 2026 at 08:18

Mass Spectrometry Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2026 at 14:08, Last updated: 6th Jul 2026 at 15:35

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: No SOPs

Data files: All_Metadata - NG Drinking Water.xlsx

Snapshots: No snapshots

Created: 9th Dec 2025 at 17:08, Last updated: 6th Jul 2026 at 15:23

RNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_8-GEX.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

PCR - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_8-GEX.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

DNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Library Prep - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Short Read Sequencing - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Mutational Spectra Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx, P.ESS-251028-V1_NG_7-NGS_Analysis

Data files: Musp_matrix-NG-drinkingwater.csv

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_1-Animals.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:57, Last updated: 6th Jul 2026 at 15:23

Mass Spectrometry - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_3-DNA_Adducts.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

GPT Assay - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_4-GPT.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

ELISA - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_9-ELISA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

RaDR - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_5-RADR.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Chemical Challenge - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_2-NDMA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:57, Last updated: 6th Jul 2026 at 15:23

Solid Phase Extraction - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: P.PLA-251030-V2_N-nitrosamine_extraction_and_pr...

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jun 2026 at 22:41, Last updated: 2nd Jun 2026 at 16:06

Mass Spectrometry Analysis - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: P.PLA-251030-V2_Analysis_of_N-nitrosamines_with...

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jun 2026 at 22:41, Last updated: 2nd Jun 2026 at 16:00

Mass Spectrometry - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: P.PLA-251030-V2_Analysis_of_N-nitrosamines_with...

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jun 2026 at 22:41, Last updated: 2nd Jun 2026 at 15:59

Water Quality Detection - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: P.PLA-251030-V2_Analysis_of_other_water_quality...

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jun 2026 at 22:41, Last updated: 2nd Jun 2026 at 15:58

Sample Collection - Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: P.PLA-251030-V2_Sample_collection.pdf

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jun 2026 at 22:41, Last updated: 2nd Jun 2026 at 15:06

Predictive Modeling - Data Linked

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: P.PLA-260430-V1_Predictive_modeling.docx

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jun 2026 at 22:41, Last updated: 2nd Jun 2026 at 14:45

All Metadata

MIT SRP

No description specified

Submitter: Taïsha Joseph-Risch

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: Low-level N-nitrosamine occurrence in disinfect...

Organisms: No organisms

SOPs: No SOPs

Data files: Kristen All Metadata.xlsx

Snapshots: No snapshots

Created: 2nd Jun 2026 at 03:20, Last updated: 2nd Jun 2026 at 03:21

Flow Cytometry – Data Linked

Hi-IMPAcTB

Flow cytometry is a laser-based, high-throughput single-cell analysis technique used to simultaneously measure multiple physical and fluorescent characteristics of cells or particles in suspension. This assay quantifies cell populations based on parameters such as cell size (forward scatter), granularity (side scatter), and fluorescence intensity of labeled surface or intracellular markers, enabling immunophenotyping, cell cycle analysis, viability assessment, and functional studies. Samples are ...

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: P.BOO-210820-V1_Surface-staining-of-BAL-and-PBM..., P.BOO-211014-V1_User-Manual_231944_smxx.pdf

Data files: AB-samples-publish2023-03-30_20-15.xlsx, ABP-samples-publish2023-03-31_14-43.xlsx, D.FCS-samples-publish2023-05-19_15-43.xlsx, D.FLOW-samples-publish2023-05-19_15-39.xlsx, TIS-samples-publish2023-03-27_16-27.xlsx

Snapshots: No snapshots

Created: 18th Oct 2021 at 18:40, Last updated: 28th May 2026 at 13:36

Patient Visit – Metadata

Hi-IMPAcTB

This assay captures administrative and clinical metadata associated with patient study visits, serving as a structured data collection framework rather than a biological measurement assay. It records visit-level contextual information such as visit dates, timepoints, subject identifiers, clinical site details, and protocol-relevant annotations that are essential for linking experimental samples and assay results to their proper clinical context. This metadata layer ensures traceability and data ...

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: P.BOO-230324-V1_2016_Nov_04_Bronchoscopy_Protoc..., P.BOO-230324-V1_2018_June_Bronchoscopy_Protocol..., P.BOO-230324-V1_2019_April_Bronchoscopy_Protoco..., P.BOO-230324-V1_2020_Jan_Bronchoscopy_Protocol_..., P.BOO-230324-V1_KC_Protocol

Data files: PAT-samples-publish2023-03-27_16-07.xlsx, PAV-samples-publish2023-03-27_16-19.xlsx

Snapshots: Snapshot 1

Created: 18th Oct 2021 at 14:23, Last updated: 28th May 2026 at 13:36

Mouse Challenge – Metadata

Hi-IMPAcTB

A mouse challenge assay introduces a defined treatment, infection, or condition to experimental mice. It assesses physiological, immunological, or pathological responses to controlled exposures. Input: Experimental mouse model Output: Treated or exposed mouse sample for downstream analysis.

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241112-V1_Antibody_cloning_and_expression..., P.ALT-241112-V1_Bacterial_Strains, P.ALT-241112-V1_Protocol_flow_staining.docx

Data files: samples-publish_PG_AB.xlsx, samples-publish_PG_BAC.xlsx, samples-publish_PG_MUS.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 17:10, Last updated: 28th May 2026 at 13:36

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