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1653 Assays visible to you, out of a total of 2679

Q-PCR LD (12:12) 17C PRR9

BioDare1

Q-PCR LD (12:12) 17C PRR9

Property	Value
BioDare ID	12820610743262
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi.xls, 17C-LD-OS-wt-cca1.xls, 17C-LD-OS-wt-lhy21.xls, 17C-LD-OS-wt-prr-gi-lc-toc.1.xls, 2011-12 PRR9 LD.2.xls, BioDare_metadata.json, Plt15&16-PRR9-190710-Prog.xls, Plt17-PRR9-260710-Prog.xls, Plt18-PRR9-270710-Prog.xls, Plt19&20-PRR9-020810-Prog.xls, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:16, Last updated: 23rd Jul 2026 at 13:11

TiMet WP1.1 WS seedling vs rosette

BioDare1

TiMet WP1.1 WS seedling vs rosette

Property	Value
BioDare ID	2843
Author	Anna Flis
Institution	MPI of Molecular Plant Physiology
License	CC_BY

Description

Ws in biological duplicates, from diurnal cycle (12L/12D) with different plants age: 9 and 20 days. Numbers are in transcript copy per cell, obtained assuming 1 g FW contains 25000000 cells.

Purpose

Compare clock important genes transcript levels in seedlings ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Primers_TiMet_AnnaFlis2013.xlsx, RNA LD seedling vs rosette.xlsx, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:09, Last updated: 23rd Jul 2026 at 13:11

Q-PCR LD (12:12) 17C CCA1

BioDare1

Q-PCR LD (12:12) 17C CCA1

Property	Value
BioDare ID	12820611467827
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-wt-cca1.xls, 17C-LD-OS-wt-lhy21.xls, 17C-LD-OS-wt-prr-gi-lc-toc.1.xls, 2011-12 CCA1 LD.xls, BioDare_metadata.json, Plt15&16-CCA1-190710-Prog.xls, Plt18-CCA1-270710-Prog.xls, Plt19&20-CCA1-020810-Prog.xls, Plt21-CCA1-180810-Prog.xls, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:11, Last updated: 23rd Jul 2026 at 13:11

TiMet WP1.1 qRT-PCR LD to LL and LD

BioDare1

TiMet WP1.1 qRT-PCR LD to LL and LD

Property	Value
BioDare ID	2841
Author	Anna Flis
Institution	MPI of Molecular Plant Physiology, Golm, Germany
License	CC_BY

Description

2 WT (Col, Ws) and 5 clock mutants, in biological duplicates, from three conditions: Diurnal cycle (12L/12D), Extended night (DD), Extended light (LL), harvest every 2 hours. Numbers are in transcript copy per cell, obtained ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Primers_TiMet_AnnaFlis2013.xlsx, RNA LD to Both LL and DD.xlsx, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:06, Last updated: 23rd Jul 2026 at 13:11

TiMet WP1.1 qRT-PCR elf3 LD

BioDare1

TiMet WP1.1 qRT-PCR elf3 LD

Property	Value
BioDare ID	2842
Author	Anna Flis
Institution	MPI of Molecular Plant Physiology
License	CC_BY

Description

WT and elf3-4 mutants, in biological duplicates, diurnal light, harvest every 2 hours Numbers are in transcript copy per cell, obtained assuming 1 g FW contains 25000000 cells.

Purpose

TiMet focuses on an important and general biological problem – how are plant ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Primers_TiMet_AnnaFlis2013.xlsx, RNA ELF3 LD.xlsx, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:07, Last updated: 23rd Jul 2026 at 13:11

Experimental data EDA kinetics

SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers

Experimental data for the initial rate kinetics of EDA for KDPG, OAA, and KHG.

Submitter: Jacky Snoep

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: The cyanobacterium Synechocystis has a promiscu...

Study: Kinetic characterisation

Organisms: No organisms

SOPs: No SOPs

Data files: EDA characterization for modelling

Snapshots: No snapshots

Created: 16th Jul 2026 at 18:35, Last updated: 16th Jul 2026 at 18:58

Mathematical model for EDA kinetic analysis

SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers

Mathematica notebook for MM model fit to the initial rate kinetics of EDA

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: The cyanobacterium Synechocystis has a promiscu...

Study: Kinetic characterisation

Organisms: No organisms

Models: Mathematical model for EDA analysis

SOPs: No SOPs

Data files: EDA characterization for modelling

Snapshots: No snapshots

Created: 16th Jul 2026 at 18:41, Last updated: 16th Jul 2026 at 18:57

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: MTB-SNP All Metadata.xlsx

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:28, Last updated: 13th Jul 2026 at 23:10

Variant Calling Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: P.FOR-260701-V1_MC-Sequencing+Analysis.docx

Data files: 1 hidden item

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:28, Last updated: 13th Jul 2026 at 23:06

Short Read Sequencing - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: P.FOR-260701-V1_MC-Sequencing+Analysis.docx

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:27, Last updated: 13th Jul 2026 at 19:45

Tissue Colleciton - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:26, Last updated: 13th Jul 2026 at 18:27

Bacterial Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:27, Last updated: 13th Jul 2026 at 18:27

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:26, Last updated: 13th Jul 2026 at 17:39

Library Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Population-level genome sequencing reveals dist...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 1st Jul 2026 at 18:27, Last updated: 13th Jul 2026 at 17:35

Soluble protein fraction of clonal enrichment culture BzS1 during growth with toluene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Peaklist files (.mgf) and mascot search files are provided per analysis. Each sample replicate was separated by gel electrophoresis and subdivided into 8 gel-slices. These were subjected to in-gel digest and LC ESI-iontrap MS/MS analyses.

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Shotgun proteomics, toluene, Soluble protein fraction, toleune

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:43, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:38, Last updated: 13th Jul 2026 at 08:18

Membrane protein-enriched fraction of clonal enrichment culture BzS1 during growth with toluene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Membrane protein-enriched fraction, toluene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:39, Last updated: 13th Jul 2026 at 08:18

Soluble protein fraction of clonal enrichment culture BzS1 during growth with benzene

Shotgun and geLC MS/MS data of clonal enrichment culture BzS1

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Shotgun and geLC MS/MS data of clonal enrichmen...

Study: Shotgun and geLC MS/MS analysis of the solble a...

Organisms: No organisms

SOPs: SOP preparation of protein fractions and analys...

Data files: Shotgun proteomics, benzense, Soluble protein fraction, benzene

Snapshots: No snapshots

Created: 13th Jul 2026 at 06:42, Last updated: 13th Jul 2026 at 08:18

Mass Spectrometry Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2026 at 14:08, Last updated: 6th Jul 2026 at 15:35

All Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: No SOPs

Data files: All_Metadata - NG Drinking Water.xlsx

Snapshots: No snapshots

Created: 9th Dec 2025 at 17:08, Last updated: 6th Jul 2026 at 15:23

RNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_8-GEX.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

PCR - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_8-GEX.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

DNA Extraction - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Library Prep - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Short Read Sequencing - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Mutational Spectra Analysis - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_6-DuplexDNA.docx, P.ESS-251028-V1_NG_7-NGS_Analysis

Data files: Musp_matrix-NG-drinkingwater.csv

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Tissue Collection - Metadata

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_1-Animals.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:57, Last updated: 6th Jul 2026 at 15:23

Mass Spectrometry - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_3-DNA_Adducts.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

GPT Assay - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_4-GPT.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

ELISA - Data Linked

MIT SRP

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MIT SRP

Study: DNA adduct and mutational profiles reveal the s...

Organisms: No organisms

SOPs: P.ESS-251028-V1_NG_9-ELISA.docx

Data files: No Data files

Snapshots: No snapshots

Created: 30th Oct 2025 at 14:58, Last updated: 6th Jul 2026 at 15:23

Assays

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Q-PCR LD (12:12) 17C PRR9

Description

Purpose

Comments

TiMet WP1.1 WS seedling vs rosette

Description

Purpose

Q-PCR LD (12:12) 17C CCA1

Description

Purpose

Comments

TiMet WP1.1 qRT-PCR LD to LL and LD

Description

TiMet WP1.1 qRT-PCR elf3 LD

Description

Purpose

Filters