Assays

What is an Assay?

5 Assays matching the given criteria: (Clear all filters)

Submitter:

Single-cell RNAseq data analysis script

iRhythmics

No description specified

Submitter: Markus Wolfien

Biological problem addressed: Gene Expression

Investigation: Disparate immune responses lead to varied outco...

Study: Single nuclei data analysis

Organisms: No organisms

Models: R script

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Dec 2022 at 20:35, Last updated: 8th Dec 2022 at 20:38

sc-SynO: a LoRAS integration to annotate rare-cell populations in scRNAseq data

iRhythmics

Application of the LoRAS oversampling approach on single-cell/single-nuclei data to annotate/identify specific cell populations in new data based on previously, manually curated data.

Submitter: Markus Wolfien

Biological problem addressed: Annotation

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

Models: Data and Jupyter notebooks for our analysis on ..., Data and Jupyter notebooks for our analysis on ..., R script for scSynO usage of the Allen Brain At..., R script to generate the preprocessing input fo..., Unix script for the kallisto bustools processin...

SOPs: No SOPs

Data files: Schematic overview of sc-SynO, sc-SynO use case 1: cardiac glial cell identifi..., sc-SynO use case 2: proliferative cardiomyocyte...

Snapshots: No snapshots

Created: 16th Oct 2020 at 11:12, Last updated: 7th May 2021 at 13:07

Comparison of 2D and 3D fluorescence image analysis

iRhythmics

(Show All)

Here, we conduct a proof of principle by comparing a 2D and 3D fluorescent image analysis based approach on unlabeled cardiomyocytes. Based on the CellProfiler software, we extracted high-dimensional features of individual cells and nuclei, which are subsequently down-sampled and clustered. These clusters are furthermore benchmarked via different machine learning classifiers (e.g., AdaBoost, Gradient Boosting, Random Forest) as the ground truth for our proposed approach.

Submitter: Markus Wolfien

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: 1 hidden item

Snapshots: No snapshots

Created: 16th Oct 2020 at 10:55, Last updated: 16th Oct 2020 at 12:28

Single nuclei RNA-Seq analysis of Fzt:DU mice

iRhythmics