R script for scSynO usage of the Allen Brain Atlas data
Version 1

Single nuclei transcriptomics data as .csv files from the Allen Brain atlas data set of mus musculus (https://celltypes.brain-map.org/) have been utilized as an input for scSynO. The underlying analysis is part of the manuscript entitled "Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling". Data anaylsis and visalizations were mainly generated with the Seurat R package (https://satijalab.org/seurat/archive/v3.2/spatial_vignette.html)

SEEK ID: https://fairdomhub.org/models/785?version=1

1 item is associated with this Model:
  • Allen_brain_atlas_scRNAseq_analysis.r (Binary file - 14.2 KB) Download

Organism: Mus musculus

Model type: Not specified

Model format: Not specified

Execution or visualisation environment: Not specified

Model image: No image specified

help Creators and Submitter
Creator
Submitter
Activity

Views: 1241   Downloads: 43

Created: 7th May 2021 at 12:49

help Attributions

None

Version History

Version 1 (earliest) Created 7th May 2021 at 12:49 by Markus Wolfien

No revision comments

Powered by
(v.1.14.2)
Copyright © 2008 - 2023 The University of Manchester and HITS gGmbH