R script for scSynO usage of the Allen Brain Atlas data
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Single nuclei transcriptomics data as .csv files from the Allen Brain atlas data set of mus musculus (https://celltypes.brain-map.org/) have been utilized as an input for scSynO. The underlying analysis is part of the manuscript entitled "Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling". Data anaylsis and visalizations were mainly generated with the Seurat R package (https://satijalab.org/seurat/archive/v3.2/spatial_vignette.html)

SEEK ID: https://fairdomhub.org/models/785?version=1

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  • Allen_brain_atlas_scRNAseq_analysis.r (Binary file - 14.2 KB) Download

Organism: Mus musculus

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Views: 577   Downloads: 27

Created: 7th May 2021 at 14:49

Last used: 29th Sep 2022 at 00:11

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Version 1 Created 7th May 2021 at 14:49 by Markus Wolfien

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