Assays

What is an Assay?

1399 Assays visible to you, out of a total of 2409

Gene Expression Analysis - Data Linked

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx

Data files: samples-250609-SC-R719C-A.GEX.xlsx, samples-250609-SC-R719C-D.SEQ.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:16, Last updated: 5th Aug 2025 at 20:37

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Intravenous BCG-mediated protection against tub...

Organisms: No organisms

SOPs: No SOPs

Data files: 1 hidden item

Snapshots: No snapshots

Created: 23rd Jan 2025 at 20:40, Last updated: 21st Jul 2025 at 15:41

All Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chemo-mechanical diffusion waves explain collec...

Organisms: No organisms

SOPs: No SOPs

Data files: AllMetadata VS-POD.xlsx

Snapshots: No snapshots

Created: 16th Jul 2025 at 17:31, Last updated: 16th Jul 2025 at 18:59

Modeling - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chemo-mechanical diffusion waves explain collec...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_250716_A.IMG.xlsx, samples-publish_250716_MDL.xlsx

Snapshots: No snapshots

Created: 16th Jul 2025 at 17:30, Last updated: 16th Jul 2025 at 18:57

Imaging Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chemo-mechanical diffusion waves explain collec...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_250716_A.IMG.xlsx, samples-publish_250716_D.IMG.xlsx

Snapshots: No snapshots

Created: 16th Jul 2025 at 17:29, Last updated: 16th Jul 2025 at 18:45

Live Cell Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chemo-mechanical diffusion waves explain collec...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_250716_CEL.xlsx, samples-publish_250716_D.IMG.xlsx

Snapshots: No snapshots

Created: 16th Jul 2025 at 17:28, Last updated: 16th Jul 2025 at 18:09

Dendritic Cell Preparation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chemo-mechanical diffusion waves explain collec...

Organisms: No organisms

SOPs: P.SHE-250716_V1-DC_Preparation.docx

Data files: samples-publish_250716_CEL.xlsx

Snapshots: No snapshots

Created: 16th Jul 2025 at 17:14, Last updated: 16th Jul 2025 at 17:42

Cell Imaging - Data Linked

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_Imaging.docx

Data files: TUNEL_quantification.xlsx, samples-250609-SC-R719C-CEL.xlsx, samples-250609-SC-R719C-D.IMG.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:12, Last updated: 9th Jun 2025 at 15:58

Proteomics Analysis - Data Linked

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_Proteomics.docx

Data files: samples-250609-SC-R719C-A.MSP.xlsx, samples-250609-SC-R719C-D.MSP.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:20, Last updated: 9th Jun 2025 at 15:56

LC - MS/MS (Proteomics) - Data Linked

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_Proteomics.docx

Data files: samples-250609-SC-R719C-CEL.xlsx, samples-250609-SC-R719C-D.MSP.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:17, Last updated: 9th Jun 2025 at 15:49

Library Creation - Metadata

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx

Data files: samples-250609-SC-R719C-DNA.xlsx, samples-250609-SC-R719C-RNA.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:14, Last updated: 9th Jun 2025 at 15:27

iPSC Culture and Chondronoid Formation - Metadata

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_Imaging.docx, P.SHO-250605-V1_Collagen_Proteomics.docx, P.SHO-250605-V1_Collagen_RNAseq.docx, P.SHO-250605-V1_Collagen_iPSC.docx

Data files: samples-250609-SC-R719C-CEL.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:11, Last updated: 9th Jun 2025 at 15:00

RNA Extraction - Metadata

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Shoulders Lab Individual Publications

Study: Human cartilage model of the precocious osteoar...

Organisms: No organisms

SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx

Data files: samples-250609-SC-R719C-CEL.xlsx, samples-250609-SC-R719C-RNA.xlsx

Snapshots: No snapshots

Created: 9th Jun 2025 at 14:13, Last updated: 9th Jun 2025 at 14:59

Computational model (in silico)

PoLiMeR - Polymers in the Liver: Metabolism and Regulation

(Show All)

No description specified

Submitter: Christoff Odendaal

Biological problem addressed: Model Analysis Type

Investigation: Mitochondrial fatty acid oxidation in human liver

Study: Sequestration of CoA and adaptation of CoA meta...

Organisms: No organisms

Models: Model notebooks, odendaal4

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 9th May 2025 at 14:40, Last updated: 16th May 2025 at 11:45

All Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Confined cell migration along extracellular mat...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata PF-IVM_v1.xlsx

Snapshots: No snapshots

Created: 15th May 2025 at 19:02, Last updated: 15th May 2025 at 19:03

Imaging Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Confined cell migration along extracellular mat...

Organisms: No organisms

SOPs: P.FRI-250515-V1_3DOpticalFlowAlgorithm.docx, P.FRI-250515-V1_IntravitalMircoscopyofTumorCell...

Data files: samples-publish_PF-IVM_A.IMG.xlsx, samples-publish_PF-IVM_D.IMG.xlsx

Snapshots: No snapshots

Created: 15th May 2025 at 18:36, Last updated: 15th May 2025 at 19:01

Intravital Microscopy

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Confined cell migration along extracellular mat...

Organisms: No organisms

SOPs: P.FRI-250515-V1_IntravitalMircoscopyofTumorCell...

Data files: samples-publish_PF-IVM_D.IMG.xlsx, samples-publish_PF-IVM_MUS.xlsx

Snapshots: No snapshots

Created: 15th May 2025 at 18:35, Last updated: 15th May 2025 at 18:58

Modeling - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250424-V1_Modeling_ChromatinConformation.pdf

Data files: samples-publish_VB-CC_MDL.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:25, Last updated: 24th Apr 2025 at 18:07

All Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - VB_CC.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 18:04, Last updated: 24th Apr 2025 at 18:06

Chromatin Sequencing Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

Data files: samples-publish_VB-CC_A.CHRM.xlsx, samples-publish_VB-CC_D.SEQ.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:16, Last updated: 24th Apr 2025 at 18:04

Short Read Sequencing - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

Data files: samples-publish_VB-CC_D.SEQ.xlsx, samples-publish_VB-CC_DNA.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:15, Last updated: 24th Apr 2025 at 18:00

Library Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_Hi-C_ChromatinConformation.docx

Data files: samples-publish_VB-CC_CEL.xlsx, samples-publish_VB-CC_DNA.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:12, Last updated: 24th Apr 2025 at 17:55

Imaging Analysis - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_ChromatinElectronMicroscopy_Chr..., P.BAC-250422-V1_PWS_ChromatinConformation.docx, P.BAC-250422-V1_SMLM_ChromatinConformation.docx

Data files: samples-publish_VB-CC_A.IMG.xlsx, samples-publish_VB-CC_D.IMG.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:11, Last updated: 24th Apr 2025 at 17:52

Cell Imaging - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_ChromatinElectronMicroscopy_Chr..., P.BAC-250422-V1_PWS_ChromatinConformation.docx, P.BAC-250422-V1_SMLM_ChromatinConformation.docx

Data files: samples-publish_VB-CC_CEL.xlsx, samples-publish_VB-CC_D.IMG.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:10, Last updated: 24th Apr 2025 at 17:49

Cell Culture - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Chromatin conformation, gene transcription, and...

Organisms: No organisms

SOPs: P.BAC-250422-V1_CellCulture_ChromatinConformati...

Data files: samples-publish_VB-CC_CEL.xlsx

Snapshots: No snapshots

Created: 24th Apr 2025 at 17:09, Last updated: 24th Apr 2025 at 17:41

Tissue Collection – Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish_PG_MUS.xlsx, samples-publish_PG_TIS.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 17:15, Last updated: 23rd Apr 2025 at 19:35

Cell Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241105-V1_Protocol_phagocytic_assays_BM_c..., P.ALT-250314-V1_scRNA_PG.docx, P.ALT-250418-V1_Protocol_mtb_restriction_assay_...

Data files: samples-publish_PG_CEL.xlsx, samples-publish_PG_TIS.xlsx

Snapshots: No snapshots

Created: 14th Mar 2022 at 17:16, Last updated: 23rd Apr 2025 at 19:35

Flow Cytometry Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241112-V1_Protocol_flow_staining.docx

Data files: samples-publish_PG_A.FLOW.xlsx, samples-publish_PG_D.FLOW.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:13, Last updated: 23rd Apr 2025 at 19:23

All Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: No SOPs

Data files: All Metadata - PG.xlsx

Snapshots: No snapshots

Created: 23rd Apr 2025 at 18:31, Last updated: 23rd Apr 2025 at 19:23

ADCD Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Antibody-Fab and -Fc features promote Mycobacte...

Organisms: No organisms

SOPs: P.ALT-241204-V1_Protocol_lmx_comp_deposition_as...

Data files: samples-publish_PG_A.ADCD.xlsx, samples-publish_PG_D.ADCD.xlsx

Snapshots: No snapshots

Created: 22nd Apr 2025 at 18:21, Last updated: 23rd Apr 2025 at 18:58

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