Assays

What is an Assay?

Filters

Query

Created At

Updated At

Project

More...

Submitter

More...

Creator

More...

Tag

More...

Organism

More...

Assay class

Assay type

More...

Technology type

More...

ISA-JSON compliance

1653 Assays visible to you, out of a total of 2679

AT0007 4x 03:21-LL

BioDare1

AT0007 4x 03:21-LL

Property	Value
BioDare ID	12730735093496
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

4 days 3hrs light 21 hrs dark followed by 3 days constant

Purpose

changes to photoperiod

Comments

plate no changed comment in lab bk

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0007.2.xls, AT0007.rgn, AT0007.xls_imported, AT0007_BRASS.xls, AT0007_BRASSDerandomized.xls, AT0007b.xls_imported, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.1.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:43, Last updated: 23rd Jul 2026 at 13:12

AT0005 4x SD-3xLL

BioDare1

AT0005 4x SD-3xLL

Property	Value
BioDare ID	12730734291594
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

alternate 4 days SD followed by 3 days constant light

Purpose

changes to photoperiod

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0005.1.xls, AT0005.rgn, AT0005.xls_imported, AT0005b.xls_imported, AT0005b_BRASS.xls, AT0005b_BRASSDerandomized.xls, AT0005b_BRASSDerandomizedDetren.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:35, Last updated: 23rd Jul 2026 at 13:12

AT0006 4x LD-3xLL

BioDare1

AT0006 4x LD-3xLL

Property	Value
BioDare ID	12730734647405
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

4 days LD followed by 3 days constant light

Purpose

changes to photoperiod

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0006.3.xls, AT0006.rgn, AT0006.xls_imported, AT0006_BRASS.xls, AT0006_BRASSDerandomized.xls, AT0006b.xls_imported, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.3.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:39, Last updated: 23rd Jul 2026 at 13:12

AT0059: 4x15:09-LL

BioDare1

AT0059: 4x15:09-LL

Property	Value
BioDare ID	12730733878982
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 15:9 LD to LL in RB light

Purpose

testing different photoperiod effect on entrainment and phase on release to LL

Comments

LHy white & dead, white fungus over cca1 lhy gi CCR2 & cca1lhy gi CCR2 plate - does not affect CCR2

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0059.2.xls, AT0059.rgn, AT0059.xls, AT0059.xls_imported, AT0059BRASSDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:32, Last updated: 23rd Jul 2026 at 13:12

AT0055: 4x9:15-LL

BioDare1

AT0055: 4x9:15-LL

Property	Value
BioDare ID	12730725716347
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging short days to LL in RB light

Purpose

testing short day entrainment and phase on release to LL

Comments

PRR9:LUC group dead, green colonies on 2x CCR2:LUC seedlings

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0055.3.xls, AT0055.rgn, AT0055.xls, AT0055.xls_imported, AT0055BRASSDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:26, Last updated: 23rd Jul 2026 at 13:12

AT0028: 4x 3:21-LL

BioDare1

AT0028: 4x 3:21-LL

Property	Value
BioDare ID	12730555174222
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 3:21 blue+red into constant light, TOC1 data show anomalous dawn peak, so TOC1 data not used for phase analysis in Edwards et al. 2010

Purpose

testing circadian phase across photoperiods

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0028-BRASSDerandomized.xls, AT0028.2.xls, AT0028.rgn, AT0028.xls, AT0028.xls_imported, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:17, Last updated: 23rd Jul 2026 at 13:12

AT0073: 4x12:12-DD

BioDare1

AT0073: 4x12:12-DD

Property	Value
BioDare ID	12730509509211
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 12L:12D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

microwave seed sterilisation

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0073.1.xls, AT0073.rgn, AT0073.xls_imported, AT0073BrassDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:14, Last updated: 23rd Jul 2026 at 13:12

AT0079: 4x12:12-DD

BioDare1

AT0079: 4x12:12-DD

Property	Value
BioDare ID	12730498782920
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 12L:12D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

CCR2 plate (WT, lhy;cca1 and lhy;cca1;gi) infected all over by end of experiment

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0079.1.xls, AT0079.rgn, AT0079.xls_imported, AT0079BrassDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:11, Last updated: 23rd Jul 2026 at 13:12

AT0075: 4x18:6-DD

BioDare1

AT0075: 4x18:6-DD

Property	Value
BioDare ID	12729849314623
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 18L:6D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

microwave seed sterilisation Pedro prepared by editing groups from previous template

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0075.1.xls, AT0075.rgn, AT0075.xls_imported, AT0075BrassDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:05, Last updated: 23rd Jul 2026 at 13:12

AT0077: 4x3:21-DD

BioDare1

AT0077: 4x3:21-DD

Property	Value
BioDare ID	12729891771943
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 3L:21D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0077.1.xls, AT0077.rgn, AT0077.xls_imported, AT0077BrassDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:08, Last updated: 23rd Jul 2026 at 13:12

AT0074: 4x15:9-DD

BioDare1

AT0074: 4x15:9-DD

Property	Value
BioDare ID	12729820597730
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

LUC imaging 15L:9D into constant dark

Purpose

testing phase changes of clock components under different photoperiods

Comments

microwave seed sterilisation

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Thomson Adrian

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0074.1.xls, AT0074.rgn, AT0074.xls_imported, AT0074brassDerandomized.1.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:02, Last updated: 23rd Jul 2026 at 13:12

Wenden_qPCR_clock_cFR, WT and elf4

BioDare1

Wenden_qPCR_clock_cFR, WT and elf4

Property	Value
BioDare ID	13395775064583
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'Light inputs shape the Arabidopsis circadian system' by: Benedicte Wenden.

Experiments performed on phyA and Col-0, 22 March to 26 Aug 2009, and on elf4, 8 March through November 2010. Published in Wenden et al. Plant Journal 2011. Curated ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BW_cFR_qPCR, WT and elf4 data.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, cFR_WT,elf4_qPCR-ForUpload.2.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 10:00, Last updated: 23rd Jul 2026 at 13:12

Wenden_qPCR_clock_cFR, WT and phyA

BioDare1

Wenden_qPCR_clock_cFR, WT and phyA

Property	Value
BioDare ID	13395774721132
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'Light inputs shape the Arabidopsis circadian system' by: Benedicte Wenden.

Experiments performed on phyA and Col-0, 22 March to 26 Aug 2009, and on elf4, 8 March through November 2010. Published in Wenden et al. Plant Journal 2011. Curated ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BW_cFR_qPCR, WT and phyA data for upload.xls, BW_cFR_qPCR, WT and phyA data.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:58, Last updated: 23rd Jul 2026 at 13:12

CCA1 and CCR2 markers in elf4 mutant under Far Red light

BioDare1

CCA1 and CCR2 markers in elf4 mutant under Far Red light

Property	Value
BioDare ID	12725469475452
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of the CCA1 and CCR2 ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv, quantification.xls, rawdata.1.xls, rawdata.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:53, Last updated: 23rd Jul 2026 at 13:12

Clock genes under Far Red light - 6

BioDare1

Clock genes under Far Red light - 6

Property	Value
BioDare ID	12730680847492
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of CCA1 and CCR2 in phyb, elf3-4, elf4-1 and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, FRLuc6RawData.1.xls, FRLuc6RawData.xls, FRLuc6RawData.xls_imported, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:56, Last updated: 23rd Jul 2026 at 13:12

Clock genes under Far Red light - 5

BioDare1

Clock genes under Far Red light - 5

Property	Value
BioDare ID	12725464084711
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of the main clock markers in elf4, elf3, gi ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, FRLuc5Rawdata.1.xls, FRLuc5Rawdata.xls, FRLuc5Rawdata.xls_imported, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:51, Last updated: 23rd Jul 2026 at 13:12

Clock genes under Far Red light - 3

BioDare1

Clock genes under Far Red light - 3

Property	Value
BioDare ID	12723746109930
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of the main clock markers under strict FR ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv, rawdata.1.xls, rawdata.xls, rawdata.xls_imported.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:49, Last updated: 23rd Jul 2026 at 13:12

080115H1

BioDare1

080115H1

Property	Value
BioDare ID	2629
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 080115H1_log.xlsx, 080115H1_metamorph.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:13, Last updated: 23rd Jul 2026 at 13:12

080115H2

BioDare1

080115H2

Property	Value
BioDare ID	2630
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 080115H2_LOG.xlsx, 080115H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:11, Last updated: 23rd Jul 2026 at 13:12

210814H2

BioDare1

210814H2

Property	Value
BioDare ID	1926
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x7 light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

Partner experiment: 210814H1

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H2_LOG.xlsx, 210814H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:07, Last updated: 23rd Jul 2026 at 13:12

210814H1

BioDare1

210814H1

Property	Value
BioDare ID	1925
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x7, Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H1_LOG.xlsx, 210814H1_metamorph.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:09, Last updated: 23rd Jul 2026 at 13:12

190614H1

BioDare1

190614H1

Property	Value
BioDare ID	1642
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H1_metamorph.xlsx, 290614H1_LOG.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:05, Last updated: 23rd Jul 2026 at 13:12

190614H2

BioDare1

190614H2

Property	Value
BioDare ID	1643
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H2_LOG.xlsx, 190614H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:03, Last updated: 23rd Jul 2026 at 13:12

270313H1: 21L 7Dx4 LLx3 (T-28)

BioDare1

270313H1: 21L 7Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13649842953637
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 21L 7D Experimental conditions: 21L7Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H1.csv, 270313H1.rgn, 270313H1_IMG_21L7D.csv, BioDare_metadata.json, RAW_270313H1.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:20, Last updated: 23rd Jul 2026 at 13:12

200313H2: 7L 21Dx4 LLx3 (T-28)

BioDare1

200313H2: 7L 21Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13643892291642
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 7L 21D Experimental conditions: 7L21Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime on imaging day 2 and day 3 appeared to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H1_7L21D.csv, 200313H2.rgn, 200313H2_IMG_7L21D.csv, BioDare_metadata.json, RAW_200313H2.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:15, Last updated: 23rd Jul 2026 at 13:12

290313H2: 15L 5Dx4 LLx3

BioDare1

290313H2: 15L 5Dx4 LLx3

Property	Value
BioDare ID	13649886952409
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 290313H2.rgn, 290313H2_15L5D_1.csv, 290313H2_15L5D_2.csv, 290313H2_15L5D_IMG.csv, BioDare_metadata.json, RAW_290313H2.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:08, Last updated: 23rd Jul 2026 at 13:12

270313H3: 12L-12Dx4 LLx3

BioDare1

270313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13650039169340
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H3.rgn, 270313H3_12L12D_x4_LLx3_White.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:49, Last updated: 23rd Jul 2026 at 13:12

200313H3: 12L-12Dx4 LLx3

BioDare1

200313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13644021710933
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H3.rgn, 200313H3_12L12D_x4_LLx3_White.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:52, Last updated: 23rd Jul 2026 at 13:12

060213H3: 12B-12Dx4 BBx3

BioDare1

060213H3: 12B-12Dx4 BBx3

Property	Value
BioDare ID	13615365050841
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Imaging script started at ZT+7mins, therefore ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060213H3 Raw Data.2.xlsx, 060213H3.rgn, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:45, Last updated: 23rd Jul 2026 at 13:12

030413H3: 12B-12Dx4 BB3

BioDare1

030413H3: 12B-12Dx4 BB3

Property	Value
BioDare ID	13661271159675
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 030413H3.rgn, 030413H3_12L12D_x4_LLx3_Blue.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:47, Last updated: 23rd Jul 2026 at 13:12

Assays

Filters ×

AT0007 4x 03:21-LL

Description

Purpose

Comments

AT0005 4x SD-3xLL

Description

Purpose

Comments

AT0006 4x LD-3xLL

Description

Purpose

Comments

AT0059: 4x15:09-LL

Description

Purpose

Comments

AT0055: 4x9:15-LL

Description

Purpose

Comments

AT0028: 4x 3:21-LL

Description

Purpose

Comments

AT0073: 4x12:12-DD

Description

Purpose

Comments

AT0079: 4x12:12-DD

Description

Purpose

Comments

AT0075: 4x18:6-DD

Description

Purpose

Comments

AT0077: 4x3:21-DD

Description

Purpose

Comments

AT0074: 4x15:9-DD

Description

Purpose

Comments

Wenden_qPCR_clock_cFR, WT and elf4

Description

Wenden_qPCR_clock_cFR, WT and phyA

Description

CCA1 and CCR2 markers in elf4 mutant under Far Red light

Description

Purpose

Clock genes under Far Red light - 6

Description

Purpose

Clock genes under Far Red light - 5

Description

Purpose

Clock genes under Far Red light - 3

Description

Purpose

080115H1

Description

Purpose

080115H2

Description

Purpose

Comments

210814H2

Description

Purpose

Comments

210814H1

Description

Purpose

190614H1

Description

Purpose

190614H2

Filters