Assays

What is an Assay?

1296 Assays visible to you, out of a total of 2252

Bacterial Challenge - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2024-06-04-BAC.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:20, Last updated: 6th Jun 2024 at 19:12

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: No SOPs

Data files: Fc-Engineered - All Metadata

Snapshots: No snapshots

Created: 5th Jun 2024 at 18:52, Last updated: 6th Jun 2024 at 19:12

Antibody-dependent NK Cell Activation - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-ADNKA-Protocol-I...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-CHM.xlsx, samples-publish2024-06-04-D.ADNKA.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:00, Last updated: 6th Jun 2024 at 19:12

Single Cell Expression Analysis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240411-V1_Fc-engineering-scRNAseq-Protoco...

Data files: samples-publish2024-06-04-A.SCXP.xlsx, samples-publish2024-06-04-DNA.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:04, Last updated: 6th Jun 2024 at 19:12

Patient Visit - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: No SOPs

Data files: samples-publish2024-06-04-PAT.xlsx, samples-publish2024-06-04-PAV.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:51, Last updated: 6th Jun 2024 at 19:12

Bacterial Survivability Restriction Assay - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-BSRA-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-D.BSRA.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:58, Last updated: 6th Jun 2024 at 19:01

Antibody-dependent Neutrophil Phagocytosis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-ADNP-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-D.ADNP.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:59, Last updated: 6th Jun 2024 at 19:01

Antibody-dependent Cellular Phagocytosis - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-ADCP-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-D.ADCP.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:01, Last updated: 6th Jun 2024 at 19:01

Antibody-dependent Complement Deposition - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-ADCD-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-D.ADCD.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:02, Last updated: 6th Jun 2024 at 19:01

ELISA - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-ELSA-Irvine.docx

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-CHM.xlsx, samples-publish2024-06-04-D.ELSA.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:56, Last updated: 6th Jun 2024 at 18:28

Luminex - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-LMX-Protocol-Irv...

Data files: samples-publish2024-06-04-D.LMX.xlsx, samples-publish2024-06-04-TIS.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:55, Last updated: 6th Jun 2024 at 18:24

Library Prep - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240411-V1_Fc-engineering-scRNAseq-Protoco...

Data files: samples-publish2024-06-04-DNA.xlsx, samples-publish2024-06-04-TIS.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:54, Last updated: 6th Jun 2024 at 18:20

Tissue Extraction - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-BSRA-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-BAC.xlsx, samples-publish2024-06-04-D.BSRA.xlsx, samples-publish2024-06-04-PAV.xlsx, samples-publish2024-06-04-TIS.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:51, Last updated: 6th Jun 2024 at 18:19

Convolutional Neural Network - Data Linked

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Utilizing convolutional neural networks for dis...

Organisms: No organisms

SOPs: P.KAM-240227-V1_Neural-Network-CNN.docx, P.KAM-240227-V1_Single-Cell-Segmentation-Analys...

Data files: samples-publish2024-03-05-D.IMG.xlsx, samples-publish2024-03-05-M.CNN.xlsx

Snapshots: No snapshots

Created: 5th Mar 2024 at 18:51, Last updated: 6th Jun 2024 at 14:46

Cell Culture and Tumor Spheroid Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Utilizing convolutional neural networks for dis...

Organisms: No organisms

SOPs: P.KAM-230131-V1_Cell-culture.docx, P.KAM-240227-V1_Cell-Culture-CNN.docx

Data files: samples-publish2024-03-05-CEL.xlsx

Snapshots: No snapshots

Created: 5th Mar 2024 at 18:49, Last updated: 6th Jun 2024 at 14:46

Device Creation - Metadata

MetNet

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: MetNet

Study: Utilizing convolutional neural networks for dis...

Organisms: No organisms

SOPs: P.KAM-240227-V1_Cell-Culture-CNN.docx

Data files: samples-publish2024-03-05-CEL.xlsx, samples-publish2024-03-05-OOC.xlsx

Snapshots: No snapshots

Created: 5th Mar 2024 at 18:49, Last updated: 6th Jun 2024 at 14:46

Antibody Challenge - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240307-V1_Engler---Golden-Gate-Cloning.pdf

Data files: samples-publish2024-06-04-AB.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 19:21, Last updated: 5th Jun 2024 at 19:42

Glycosylation Assay - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Fc-engineered antibodies leverage neutrophils t...

Organisms: No organisms

SOPs: P.ALT-240308-V1_Fc-engineering-GLYN-Protocol-Ir...

Data files: samples-publish2024-06-04-AB.xlsx, samples-publish2024-06-04-D.GLYN.xlsx

Snapshots: No snapshots

Created: 4th Jun 2024 at 18:56, Last updated: 5th Jun 2024 at 19:24

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Humoral correlates of protection against Mycoba...

Organisms: No organisms

SOPs: P.ALT-231213-V1_EI-IVBCG_Dose-PAV-TIS

Data files: samples-publish2023-12-23-PAV.xlsx, samples-publish2023-12-23-TIS.xlsx

Snapshots: No snapshots

Created: 19th Dec 2023 at 20:03, Last updated: 4th Jun 2024 at 20:24

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Specific CD4+ T cell phenotypes associate with ...

Organisms: No organisms

SOPs: No SOPs

Data files: RSTR_All_Metadata

Snapshots: No snapshots

Created: 3rd Jun 2024 at 21:09, Last updated: 4th Jun 2024 at 15:37

Flow Cytometry - Data Linked

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Specific CD4+ T cell phenotypes associate with ...

Organisms: No organisms

SOPs: P.SES-230405-V1_JP_Flow_Protocol.docx

Data files: AB-samples-publish-2024-05-21_15-29.xlsx, AB-samples-publish2023-05-17_15-29.xlsx, ABP-samples-publish-2024-05-21_15-30.xlsx, ABP-samples-publish2023-05-17_15-30.xlsx, D.FCS-samples-publish-2024-05-21_12-52.xlsx, D.FCS-samples-publish2023-06-01_12-52.xlsx, D.FLOW-samples-publish-2024-05-21_11-32.xlsx, D.FLOW-samples-publish2023-06-01_11-32.xlsx, TIS-samples-publish-2024-05-21_15-05.xlsx, TIS-samples-publish2023-05-17_15-05.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:23, Last updated: 4th Jun 2024 at 15:37

Tissue Collection - Metadata

Hi-IMPAcTB

No description specified

Submitter: Charles Demurjian

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Specific CD4+ T cell phenotypes associate with ...

Organisms: No organisms

SOPs: P.BOO-230324-V1_KC_Protocol

Data files: PAV-samples-publish-2024-05-21_13-27.xlsx, PAV-samples-publish2023-05-17_13-27.xlsx, TIS-samples-publish-2024-05-21_15-05.xlsx, TIS-samples-publish2023-05-17_15-05.xlsx

Snapshots: No snapshots

Created: 15th May 2023 at 20:19, Last updated: 30th May 2024 at 15:01

Flow Cytometry – Data Linked

Hi-IMPAcTB

No description specified

Submitter: Dikshant Pradhan

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: IMPAcTB

Study: Immune cells in bronchoalveolar lavage fluid of...

Organisms: No organisms

SOPs: P.BOO-210820-V1_Surface-staining-of-BAL-and-PBM..., P.BOO-211014-V1_User-Manual_231944_smxx.pdf

Data files: AB-samples-publish2023-03-30_20-15.xlsx, ABP-samples-publish2023-03-31_14-43.xlsx, D.FCS-samples-publish2023-05-19_15-43.xlsx, D.FLOW-samples-publish2023-05-19_15-39.xlsx, TIS-samples-publish2023-03-27_16-27.xlsx

Snapshots: No snapshots

Created: 18th Oct 2021 at 18:40, Last updated: 21st May 2024 at 16:17

EbN1 Systems Biology

(Show All)

No description specified

Submitter: Lars Wöhlbrand

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: Systems biology investigation of aromatic compo...

Study: Experimental multi-OMICS

Organisms: No organisms

SOPs: SOP – Protein preparation, nanoLC-MS/MS analyse...

Data files: Detailed peptide data for identified proteins, Protein identification data

Snapshots: No snapshots

Created: 3rd Jun 2022 at 09:03, Last updated: 11th Apr 2024 at 08:15

The influence on functional enrichment analysis

The evolution of Gene Ontology

No description specified

Submitter: Yi Chen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Exploring the Evolution of the Gene Ontology an...

Study: The influence of GO evolution on downstream ana...

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Apr 2024 at 21:21, Last updated: 8th Apr 2024 at 21:24

GO evolution - Terms and Annotations

The evolution of Gene Ontology

No description specified

Submitter: Yi Chen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Exploring the Evolution of the Gene Ontology an...

Study: Exploring how the concept and structure was inf...

Organisms: No organisms

SOPs: No SOPs

Data files: Reviewed and unreviewed proteins, Statistics of GO and GOA for 3 aspects from Jan..., Statistics of GO and GOA from Jan 2015 to Dec 2021, Top20 nodes with highest Degree Centrality score

Snapshots: No snapshots

Created: 8th Apr 2024 at 20:51, Last updated: 8th Apr 2024 at 21:11

Simulation of HSD11B1 inhibition in human adipose tissue

Steroid biosynthesis

Model simulation of cortisone or 11KA4 metabolism in human subcutaneous and omental adipose tissue, and the effect of AZD4017 inhibition of HSD11B1.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Effect of 11BHSD inhibition on 11-ketotestoster...

Study: Inhibition of HSD11B1 in adipose tissue

Organisms: No organisms

Models: Mathematica notebook for simulation of HSD11B1 ...

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 24th Feb 2024 at 14:41, Last updated: 17th Mar 2024 at 09:00

Inhibition of HSD11B1 in adipose tissue

Steroid biosynthesis

Excel file with experimental data for HSD11B1 inhibition in human subcutaneous and omental adipose tissue. Effect on 72h point for cortisone, and 11KA4 metabolism and respective products formed in absence or presence of AZD4017 inhibitor.

Submitter: Jacky Snoep

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Effect of 11BHSD inhibition on 11-ketotestoster...

Study: Inhibition of HSD11B1 in adipose tissue

Organisms: No organisms

SOPs: No SOPs

Data files: HSD11B1 inhibition in human adipose tissue

Snapshots: No snapshots

Created: 24th Feb 2024 at 14:35, Last updated: 17th Mar 2024 at 08:58

Model for computational analysis of HSD11B1/AKR1C3 ratio variation and HSD11B1 inhibition.

Steroid biosynthesis

A mathematica notebook that simulates the combined effect of HSD11B1/AKR1C3 ratio variation and HSD11B1 inhibition.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Effect of 11BHSD inhibition on 11-ketotestoster...

Study: Computational analysis of combined HSD11B1/AKR1...

Organisms: No organisms

Models: Mathematica notebook for simulation of HSD11B1/...

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 21st Feb 2024 at 15:10, Last updated: 17th Mar 2024 at 08:57

Model simulations of HSD11B1/AKR1C3 incubation and cortisone and 11KA4 inversion during CBX inhibition

Steroid biosynthesis

HSD11B1 was inhibitied by CBX and the effect of the inhibition on cortisone and 11KA4 conversion was simulated. The model was coded in Mathematica and the f=manuscript figures 3 A,B,C,D,E anbd F are presented in the notebook.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Effect of 11BHSD inhibition on 11-ketotestoster...

Study: CBX inhibition of HSD11B1 and effect on HSD11B1...

Organisms: No organisms

Models: Model simulations of HSD11B1/AKR1C3 incubation ...

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 19th Feb 2024 at 13:49, Last updated: 17th Mar 2024 at 08:56

(v.1.16.2)

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