6th All hands PALs meeting on 29 - 30 of November 2012 in Heidelberg
The next All Hands PALs meeting will take place on Thursday 29th and Friday 30th November 2012 in Heidelberg. The meeting will start on Thursday morning (arriving in Heidelberg on Wednesday evening), and finishing after lunch on Friday, so that you can get to home before weekend starts.
Meeting agenda
Thursday 29th November
9:15 Arriving at HITS
9:30 – 10:00 Introduction to PALs meeting
10:00 – 10:45 Review of new SEEK features.
10:45 – 11:00 Coffee break
11:00 – 12:00 An update on SEEK BioSamples (templates and UI)
12:00 – 13:30 Lunch
13:30 – 14:00 Linking and versioning assets in SEEK
14: 00 – 15:30 Dagmar Waltemath, University of Rostock : Model versioning, standards for simulation results (SED ML) - lecture and discussion
Lecture can be found at slideshare page : http://de.slideshare.net/slideshow/embed_code/15516376
15: 30 – 15:45 Coffee break
15:45 -16:30 Tobias Czauderna SBGN Editor : demo & training
16:30: 17:30 PALs responses to SySMO DB team’s questionnaire
19:00 Dinner & bowling
Friday 30th November
9:00 – 9:45 SEEK RDF - new ways of querying and exploring the contents of SEEK & 20 questions review
09:45 – 11:30 Approaching the end of projects - Issues and requirements for uploading project data/models and long term SEEK access (with a coffee break inbetween) 11:30 – 12:00 Conclusions, closing 12:00 – 13:00 Lunch
SysMO-DB Team
Export PNG
DownloadRelated items
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- facilitates and maximises the potential for data exchange between SysMO research groups;
- maximises the ‘shelf life’ and ...
Programme: SysMO
Public web page: http://www.sysmo-db.org/
Presented by MARTIN SCHARM at SySMO PALs meeting 29-30 November 2012 in Heidelberg
Creators: Olga Krebs, MARTIN SCHARM
Submitter: Olga Krebs
An overview of the RDF work being done with SEEK, given at the PALs meeting, November 2012. It gives a high level explanation of what RDF is, why its useful and can be used for filtering and finding out information about the data in SEEK. This talk proceeded an interactive session where the PALs came up with 20 questions, to help us refine our model and prioritise what we describe.
Creator: Stuart Owen
Submitter: Stuart Owen
This document is a summary of the SysMO-DB PALs meeting on the 29-30 November 2012
Creators: Katy Wolstencroft, Olga Krebs, Stuart Owen
Submitter: Katy Wolstencroft
Issues and considerations for data management as SysMO projects approach the end of their funding
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
Presented by Ron Henkel at SySMO PALs meeting 29-30 November 2012 in Heidelberg
Creator: Ron Henkel
Submitter: Olga Krebs
Presented by Tobias Czauderna from Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) in Gatersleben at the SysMO PALs Meeting Heidelberg,29-11-2012
Creators: Olga Krebs, Tobias Czauderna
Submitter: Olga Krebs
Olga's presentation at SySMO PALs meeting 29 – 30 November 2012, Heidelberg
Creators: Olga Krebs, PALs
Submitter: Olga Krebs
