Julio is the leader of the Computational Biology Lab at MBG-CSIC (Pontevedra, Spain), an institute of CSIC (Spanish National Research Council). More info at https://www.bangalab.org
Our research is focused in computational systems and synthetic biology.
We use mathematical modelling, simulation and optimization to understand complex biological systems and processes.
Current research topics include:
-
Reverse engineering: systems identification (dynamic modelling) of biological networks
...
Projects: Working Group Nicole Radde, SteaPKMod
Institutions: University of Stuttgart
https://orcid.org/0000-0002-5300-0915Currently I focuse on the integration of data into multi-scale models with statistical methods and uncertainty tracking in the research unit QuaLiPerF.
Projects: COVID-19 Disease Map, Covid-19 Interferon pathway modelling and analysis, Boolean modeling of Parkinson disease map
Institutions: Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg
https://orcid.org/0000-0001-7403-181XExpertise: Machine Learning, Deep Learning, Modeling, Medical microbiology, Molecular Biology
Tools: Python, R, Matlab, Javascript, SBML, Dynamic modelling, microbiology techniques, Shell scripting
Projects: COVID-19 Disease Map
Institutions: University of Tübingen
https://orcid.org/0000-0002-1240-5553Expertise: Systems Biology, Computational Systems Biology, Databases, Dynamic modelling, Java, Mathematical modelling, Metabolic Engineering, Disease Maps, Curation, Modeling, Data Integration, Constraint-based Modelling, Parameter estimation
Tools: SBML, SBGN, SBGNML, JSBML, Jupyter, Python, cobrapy toolbox, SBSCL, InSilico, Kinetic Modeling
Andreas Dräger is the assistant professor for Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens at the University of Tübingen in Germany. His group aims to combat the spreading antibiotics resistances by using mathematical modeling and computer simulation of bacterial systems up to entire microbiomes and host-pathogen interactions. In doing so, his group actively contributes to the advancement of various COMBINE standards.
Projects: COVID-19 Disease Map
Institutions: Shanghai University
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map, Covid-19 Interferon pathway modelling and analysis
Institutions: University of Nebraska-Lincoln
Expertise: Modeling
Projects: COVID-19 Disease Map
Institutions: Indraprastha Institute of Information Technology Delhi
Expertise: outreach, Curation, Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Shanghai University
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Montpellier
https://orcid.org/0000-0001-6453-5707Leader of Computational Systems Biology team at LPHI UMR 5235 CNRS and University of Montpellier
Projects: COVID-19 Disease Map
Institutions: Auckland Bioengineering Institute
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Oregon Health & Science University (OHSU)
Projects: Not specified
Institutions: Not specified
Expertise: Modeling
Projects: COVID-19 Disease Map
Institutions: Fundacion, Progreso y Salud
Expertise: Modeling
Projects: COVID-19 Disease Map
Institutions: Centre de Recherche en Cancerologie de Toulouse
Expertise: Modeling
Projects: COVID-19 Disease Map
Institutions: Gladstone Institutes
Expertise: Curation, Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Rochester
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Centre national de la Recherche Scientifique (CNRS)
Expertise: Simulation of protein-protein interactions, Modeling
Projects: COVID-19 Disease Map
Institutions: Biomathematica
Projects: COVID-19 Disease Map
Institutions: ICAHN Icahn School of Medicine at Mount Sinai
Expertise: Modeling
Projects: COVID-19 Disease Map
Institutions: American University of Sharjah
Expertise: Modeling
Projects: COVID-19 Disease Map
Institutions: University of Florida
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Institute for Globally Distributed Open Research and Education - IGDORE
Expertise: Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Lisbon
Expertise: Curation, Modeling, Validation
Projects: COVID-19 Disease Map
Institutions: MRC-University of Glasgow Centre for Virus Research
https://orcid.org/0000-0003-0411-4497Expertise: Modeling, Bioinformatics, Systems Biology
Tools: R
Bioinformatician / Computational Biologist
Projects: ZucAt, Modelling COVID-19 epidemics
Institutions: Institute of Cytology and Genetics, Novosibirsk State University
Expertise: Systems Biology, molecular genetic systems, gene networks, gene expression, Modeling
Tools: Java, Vaadin, Kinetic Modeling
I am staff scientist in the lab of molecular-genetic systems at the Department of Systems Biology, Institute of Cytology and Genetics SB RAS and Postdoc Research Fellow at San Diego State University. My research focus is dynamical modeling of gene network functioining.
Projects: PoLiMeR - Polymers in the Liver: Metabolism and Regulation
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Expertise: metabolism, Liver, fatty acid, Metabolic Models
Tools: experimental tools, Modeling
This profile is created to handle PoLiMeR data only - mainly the materials from Anne-Claire M.F. Martines PhD thesis (temporary solution)
Projects: BESTER
Institutions: PROCESSIUM
Process engineer since 2011 at Processium
Comparative flux balance analysis file. All values are given in mmol/g/h. Fluxes were optimized to maximize BIOMASS.
Creators: None
Submitter: Julia Koblitz
Investigations: Systems biology investigation of aromatic compo...
Studies: Metabolic Modelling
Assays: Metabolic modeling of EbN1
Abstract (Expand)
Authors: Mohamed Albadry, Sebastian Höpfl, Nadia Ehteshamzad, Matthias König, Michael Böttcher, Jasna Neumann, Amelie Lupp, Olaf Dirsch, Nicole Radde, Bruno Christ, Madlen Christ, Lars Ole Schwen, Hendrik Laue, Robert Klopfleisch, Uta Dahmen
Date Published: 1st Dec 2022
Publication Type: Journal
DOI: 10.1038/s41598-022-26483-6
Citation: Sci Rep 12(1),21825
Abstract (Expand)
Authors: H. Yang, M. Arif, M. Yuan, X. Li, K. Shong, H. Turkez, J. Nielsen, M. Uhlen, J. Boren, C. Zhang, A. Mardinoglu
Date Published: 19th Nov 2021
Publication Type: Journal
PubMed ID: 34712920
Citation: iScience. 2021 Oct 5;24(11):103222. doi: 10.1016/j.isci.2021.103222. eCollection 2021 Nov 19.