Biochemist currently keeping busy as: Research Data Manager (Vrije Universiteit Amsterdam), Software Engineer (Heidelberg University) and member of the SBML Development Team (Caltech).
Projects: LEANPROT, FAIRDOM user meeting, Rhodolive
Institutions: Latvia University of Agriculture, Institute of Microbiology and Biotechnology, University of Latvia

Roles: Vice Coordinator
Expertise: Kinetic modelling, optimization, Parameter estimation
Tools: Copasi, COBRA toolbox
Projects: Kinetics on the move - Workshop 2016, Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), FAIRDOM user meeting, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: Charité University Medicine Berlin, Humboldt-Universität zu Berlin, Humboldt University Berlin

Roles: Project Coordinator
Expertise: Computational modelling, Metabolic Models, Kinetic modelling, Liver, Metabolic Networks, Computational Biology
Tools: SBML, SED-ML, ODE, roadrunner, tellurium, Cytoscape, jupyter notebooks
We are investigating liver metabolism and function with the help of computational models and methods.
Read more about the LiSyM junior group at: www.livermetabolism.com
Junior Group Leader
Dr. Matthias König
Institute for Theoretical Biology
Humboldt-University Berlin
Invalidenstraße 43, 10117 Berlin, Germany
phone +49 30 2093-8450
konigmatt@googlemail.com
The liver is the central metabolic organ of our body playing a crucial role in the clearance of drugs, xenobiotics and numerous metabolites
...
Projects: SilicoTryp, SYSTERACT, SynBio4Flav
Institutions: University of Glasgow, Chalmers University of Technology

Projects: SysMO DB, Whole body modelling of glucose metabolism in malaria patients, Manchester Institute for Biotechnology, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, GenoSysFat, DigiSal, FAIRDOM user meeting, FAIRDOM Templates
Institutions: University of Manchester - Department of Computer Science, Manchester Centre for Integrative Systems Biology, University of Manchester

Roles: Postdoc
Expertise: Systems Biology, Metabolic Engineering, Stoichiometric modelling, Kinetic modelling, Data Management, Metabolic Networks
Tools: Python, Copasi, Matlab, COBRA toolbox
Interested in systems + synthetic biology, biotechnology, mountaineering, swimming, running, and the occasional cup of tea. Once diagnosed as an ENFP.
An existing detailed kinetic model for the steady-state behavior of yeast glycolysis was tested for its ability to simulate dynamic behavior. This model (dupreez1) is the basis kinetic model derived from that published by Teusink et al., 2000 (PMID: 10951190).
Creators: Franco du Preez, David D van Niekerk
Submitter: Franco du Preez
Model type: Ordinary differential equations (ODE)
Model format: Not specified
Environment: JWS Online
Organism: Saccharomyces cerevisiae
Investigations: Yeast Glycolytic Oscillations
Studies: Detailed kinetics of yeast glycolytic oscillation
Modelling analyses: Detailed kinetic model of yeast glycolytic osci...
Abstract
Authors: Wolfgang Müller, Meik Bittkowski, Martin Golebiewski, Renate Kania, Maja Rey, Andreas Weidemann, Ulrike Wittig
Date Published: 1st Mar 2017
Publication Type: Journal
DOI: 10.1007/s13222-016-0243-4
Citation: Datenbank Spektrum 17(1):21-28
Abstract (Expand)
Authors: , David D van Niekerk, Bob Kooi, Johann M Rohwer,
Date Published: 21st Jun 2012
Publication Type: Not specified
PubMed ID: 22712534
Citation:
Abstract (Expand)
Authors: , David D van Niekerk,
Date Published: 13th Jun 2012
Publication Type: Not specified
PubMed ID: 22686585
Citation:
Abstract (Expand)
Authors: Anna-Karin Gustavsson, David D van Niekerk, Caroline B Adiels, , Mattias Goksör,
Date Published: 23rd May 2012
Publication Type: Not specified
PubMed ID: 22607453
Citation:
Presented by Ron Henkel at SySMO PALs meeting 29-30 November 2012 in Heidelberg
Creator: Ron Henkel
Submitter: Olga Krebs