I am a Researcher at the National Laboratory of Scientific Computing (LNCC). I am a bioinformatician and my research interests are in data integration and analyses. I use scientific workflows technologies to integrate and analyse data in systems biology, phylogenomics, and functional genomics.
Post Doc (2010 – 2015) of the Department of Computer Science at the COPPE Institute of the Federal University of Rio de Janeiro (Brazil) and was supported by a FAPERJ’s grant “Post-Doc Note 10” (2013 –
Institutions: University Medical Center Göttingenhttps://orcid.org/0000-0002-6307-3253
Researcher at the University Medical Center Göttingen, Department of Medical Informatics
Institutions: University of Rostockhttps://orcid.org/0000-0002-1678-0051
Projects: Not specified
Institutions: Not specifiedhttps://orcid.org/0000-0002-3671-895X
Researcher at the European Institute for Systems Biology and Medicine, working on network-based data analytics within the EU eTRIKS Project.
Institutions: National Institute of Biologyhttps://orcid.org/0000-0002-1669-6482
Roles: PhD Student
Expertise: Data analysisMathematical modellingBioinformaticsSystems biology, Data integration, Data Management, Visualization, Data analysis, computational biology, Bioinformatics, Molecular Biology, Mathematical and statistical modeling, Statistics, Programming
Tools: Bioinformatics, Data integration, Dynamic modelling, R, Computational and theoretical biology, Data Management, Molecular Biology, Systems Biology, Computational Systems Biology, Databases, Python
Computational Biologist, Young Researcher at Department of Biotechnology and Systems Biology, National Institute of Biology NIB and PhD candidate in Statistics, Ljubljana, Slovenia
Institutions: University of Rostockhttps://orcid.org/0000-0002-1887-4772
Projects: Not specified
Institutions: Not specifiedhttps://orcid.org/0000-0002-8363-0678
Institutions: University Medical Center Göttingenhttps://orcid.org/0000-0002-1505-594X
Student (M.Sc. Medical Informatics) @ Georg-August-University Göttingen
Research Associate @ Department of Medical Informatics, University Medical Center Göttingen
Institutions: Technische Universität Dresdenhttps://orcid.org/0000-0003-0137-5106
Lutz Brusch is heading the research group "Spatio-temporal pattern formation in cells and tissues" at the Centre for Information Services and High Performance Computing of TU Dresden, Germany. The group is co-developing the multi-cellular modelling and simulation framework Morpheus (https://imc.zih.tu-dresden.de/wiki/morpheus/) and is collaborating with experimental labs on questions of tissue morphogenesis and regeneration.
Institutions: National Institute of Biologyhttps://orcid.org/0000-0003-4776-7164
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, FAIRDOM user meeting, _p_stRT
Institutions: National Institute of Biologyhttps://orcid.org/0000-0001-5906-8569
Institutions: National Institute of Biologyhttps://orcid.org/0000-0003-0913-2715
Institutions: National Institute of Biologyhttps://orcid.org/0000-0001-7484-6031
Professor, Centre of Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne
My research interests focus on understanding metabolic homeostasis. We are mainly using genetically modified mouse models and systems approaches. I am also very keen in exploring how Omics approaches is changing, or not changing, key biological concepts.
Link to complete publication list : http://orcid.org/0000-0001-5483-288X
Institutions: University of Luxembourghttps://orcid.org/0000-0002-8071-7110
Associate Professor for Systems Biomedicine, Luxembourg Centre for Systems Biomedicine, University of Luxembourg
Projects: HUMET Startup
Institutions: Centro de Investigación Príncipe Felipehttps://orcid.org/0000-0003-3318-120X
Tools: Computational Systems Biology, Dynamic modelling, R, Java, Bioinformatics, Data Management, Genetics, Systems Biology, Computational and theoretical biology, Databases, Genomics, Transcriptomics
My scientific interests revolve around functional genomics, systems biology and the development of algorithms and software for the analysis of high-throughput data (mainly, but not restricted to, Next Generation Sequencing) and its application to the relationship between genotype and phenotype, mainly oriented to personalized and precision medicine. I am especially interested in the study of disease mechanisms and drug action mechanisms, drug repositioning and the definition of mechanism-based
Projects: FAIRDOM, Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, MS_DILI, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training, EnzymeML, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", FAIRDOM Community Workershttps://orcid.org/0000-0002-8683-7084
Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team.
Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and
Projects: de.NBI-SysBio, GenoSysFat, Kinetics on the move - Workshop 2016, Example use cases, COMBINE Multicellular Modelling, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"https://orcid.org/0000-0002-5886-5563
I am a computer scientist by training with a specialisation on database and information systems. Since December 2018 I am professor of Medical Informatics at the University Medicine in Greifswald, Germany, at the Institute of Community Medicine. My lab focuses on research data management in biomedicine, data integration across health care providers, and provenance of clinical research data items within clinical information systems. Furthermore, I am actively involved in COMBINE standardisation
Systems Biologist specialising in data integration, high-throughput sequence analysis, and evolutionary and comparative analyses.
Institutions: Beuth University of Applied Sciences Berlinhttps://orcid.org/0000-0001-6096-1354
Roles: Project Coordinator
Expertise: Nonlinear Dynamics, Data integration, Dynamic optimization., Optimal experimental design, bioreactor models, dynamics of biological networks, parameter estimation, coupling metabolome and environome, rapid sampling experiments, Data Management, Mathematical modelling
Process engineer, modeling biological systems since 1985.
Components: tr2aacds headers, cdhit-2d; post-filtering redefinition of paralogue clusters
Filtering according to biological evidence; removal of contaminants, chimeras and suspicious constructs
EvidentialGene tr2aacds.pl VERSION 2016.07.11
Multiple sequence alignment, pantranscriptomes paralogue clusters
Contributor: Maja Zagorscak
Biological problem addressed: Multiple sequence alignment
Snapshots: No snapshots
Date Published: 24th Oct 2017
Journal: Not specified
Citation: Knopp C. Nutzung von Persistent Identifiern zur Umsetzung der FAIR-Prinzipien in Datenablageplattformen für die medizinische Forschung [Bachelorarbeit]. Göttingen: Georg-August-Universität; 2017.
Date Published: 7th Apr 2016
Journal: Interface Focus
PubMed ID: 27051515
Citation: Interface Focus. 2016 Apr 6;6(2):20150103. doi: 10.1098/rsfs.2015.0103.
Authors: Katy Wolstencroft, Olga Krebs, Jacky Snoep, Natalie Stanford, Finn Bacall, Martin Golebiewski, Rostyslav Kuzyakiv, Quyen Nguyen, Stuart Owen, S. Soiland-Reyes, Jakub Straszewski, D. D. van Niekerk, Alan Williams, L. Malmstrom, Bernd Rinn, Wolfgang Müller, Carole Goble
Date Published: 3rd Dec 2016
Journal: Nucleic Acids Res
PubMed ID: 27899646
Citation: Nucleic Acids Res. 2016 Nov 28. pii: gkw1032.
Poster presented at SWAT4LS - Semantic web applications and tools for life science- in Berlin at 10 of december 2014 by Olga Krebs
Contributor: Olga Krebs