Validation by simulating independent OE, KO mutant and perturbation samples, using sampling of the gausian distribution based on the mean and SD of measurements per sample. A 1000 samples of the gausian distribution of the mean and SD was performed per sample to show error in the measurements and how it propegates in predicted metabolite concentration in SS
Contributor: Niels Zondervan
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
Investigation: Modelling of M. pneumoniae metabolism
Study: Core Model predictions
Organisms: No organisms
SOPs: No SOPs
Data files: 40 samples internal metabolite concentrations F..., Comparison of model SS metabolite concentration..., Dynamic modelling pipeline, Internal metabolite concentraitons for mutants,..., Symmetric mean absolute percentage error per sa...
Supplementary information file from Chew et al. PNAS 2014, including full model description for Arabidopsis Framework Model v1, model simulations and experimental validations.
Investigations: Arabidopsis Framework Model v1, predicting rose...
Studies: Construction of Framework Model v1
Written and presented by Dagmar Waltemath (University of Rostock) as part of the Reproducible and Citable Data and Models Workshop in Warnemünde, Germany. September 14th - 16th 2015.
Contributor: Natalie Stanford