In future we should split these versions into separate Assays, and link to the four, original component models, when they are imported with the PlaSMo resource into FairdomHub (expected late 2018)
SEEK ID: https://fairdomhub.org/assays/713
Projects: Millar group
Biological problem addressed: Model Analysis Type
Organisms: No organisms
Created: 22nd Aug 2018 at 13:23
Last updated: 22nd Aug 2018 at 13:28
Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Institutions: University of Edinburghhttps://orcid.org/0000-0003-1756-3654
Data, models and simulations for the Chew et al. 2014 paper (PNAS, https://doi.org/10.1073/pnas.1410238111), using wild-type Arabidopsis ecotype Col-0 in standard 12hL:12hD growth conditions, compared to La(er) or Fei-0 accessions, or to plants overexpressing a micro RNA (miR156).
Snapshots: No snapshots
Studies: Construction of Framework Model v1, Test of FMv1, growth study of Col-0 accession in 12L:12D, Test of FMv1, growth study of Col-0 accession in 5 photoperiods, Test of FMv1, growth study of other accessions and transgenic line in 12...
Assays: Arabidopsis Framework Model v1, Matlab and Simile version, Gas exchange of Fei-0 and Ler plants in 12hL:12hD, Growth of Col-0 and 35S:miR156 plants in 12hL:12hD, Growth of Col-0 in 12hL:12hD, Growth of Col-0 plants in 5 photoperiods, Growth of Fei-0 and Ler plants in 12hL:12hD
The FMv1 was constructed from 4 existing models, with Matlab and Simile versions.
Person responsible: Andrew Millar
Snapshots: No snapshots
Supplementary information file from Chew et al. PNAS 2014, including full model description for Arabidopsis Framework Model v1, model simulations and experimental validations.
Investigations: Arabidopsis Framework Model v1, predicting rose...
Studies: Construction of Framework Model v1
This record includes Matlab and Simile format versions of the Arabidopsis Framework Model version 1, FMv1 (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111), copied from the PlaSMo resource (www.plasmo.ed.ac.uk), PLM_ID=76. The model description is in the Supplementary Materials of the publication, which should be uploaded somewhere here also but I don't see how to do it.
The FMv1 links the following sub-models:
1. Arabidopsis leaf carbohydrate model (Rasse and
Contributor: Andrew Millar
Model type: Not specified
Model format: Matlab package
Organism: Arabidopsis thaliana
Investigations: Arabidopsis Framework Model v1, predicting rose..., Prediction and analysis of phenotypes in Arabid... and 1 hidden item
Studies: Construction of Framework Model v1 and 2 hidden items
Modelling analyses: Arabidopsis Framework Model v1, Matlab and Simi... and 2 hidden items