For plants, light is a signal that carries information about the environment, and a source of energy for photosynthesis. PHYTOCAL focuses on the interaction between phytochrome signalling and photosynthesis, and seeks to understand fundamental processes that make carbon (C) and nitrogen (N) resources available for plant growth. These unexplored connections underlie biomass production and plasticity, which contribute significantly to yield variability in the field.
Programme: SynthSys
SEEK ID: https://fairdomhub.org/projects/88
Public web page: http://hallidaylab.bio.ed.ac.uk/node/1
Organisms: Arabidopsis thaliana, Brassica rapa
FAIRDOM PALs: No PALs for this Project
Project created: 6th Oct 2017
Related items
- People (10)
- Programmes (1)
- Institutions (3)
- Strains (1)
- Data files (0+3)
- Models (0+1)
- Publications (4)
Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Institutions: University of Edinburgh
https://orcid.org/0000-0003-1756-3654Projects: PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, Light and plant development, Light control of leaf development
Institutions: University of Edinburgh
https://orcid.org/0000-0003-0737-2408Expertise: arabidopsis thaliana, caenorhabditis elegans, circadian rhythms, chronobiology, Transcriptomics, splicing, alternative splicing, R, photobiology, plant architecture, leaf development
Tools: Molecular Biology, Molecular biology techniques (RNA/DNA/Protein), R, Systems Biology, Transcriptomics, Bioinformatics, Databases, Genetics, Plant biology, C. elegans biology
Projects: Millar group, PlaSMo model repository, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, Light and plant development, Light control of leaf development, Toggle switch, Reduce Complexity (RCO) reconstruction, Model Driven Prime Editing, PULSE 2.0, Plant optogenetics
Institutions: University of Edinburgh, Heinrich Heine University of Düsseldorf
https://orcid.org/0000-0002-7975-5013SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
Submitter: Andrew Millar
Provider Name: Mark Stitt
Provider's strain ID: Not specified
Organism: Arabidopsis thaliana
Genotypes: EMS AT5G51820
Phenotypes: starch deficient
Comment: I assume pgm-1
Abstract (Expand)
Authors: Deyue Yang, Daniel D. Seaton, Johanna Krahmer, Karen J. Halliday
Date Published: 5th Jul 2016
Publication Type: Not specified
Citation: Proc Natl Acad Sci USA 113(27) : 7667
Abstract (Expand)
Authors: A. A. Arsovski, J. E. Zemke, B. D. Haagen, S. H. Kim, J. L. Nemhauser
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 29514292
Citation: J Exp Bot. 2018 May 19;69(11):2837-2846. doi: 10.1093/jxb/ery080.
Abstract
Authors: J. Krahmer, A. Ganpudi, A. Abbas, A. Romanowski, K. J. Halliday
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 29254984
Citation: Plant Physiol. 2018 Feb;176(2):1039-1048. doi: 10.1104/pp.17.01437. Epub 2017 Dec 18.
Abstract (Expand)
Authors: V. Mengin, E. T. Pyl, T. Alexandre Moraes, R. Sulpice, N. Krohn, B. Encke, M. Stitt
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 28628949
Citation: Plant Cell Environ. 2017 Nov;40(11):2608-2627. doi: 10.1111/pce.13000. Epub 2017 Aug 17.