SEEK ID: https://fairdomhub.org/people/973
Location: United Kingdom
ORCID: https://orcid.org/0000-0003-0737-2408
Joined: 6th Oct 2017
Expertise: arabidopsis thaliana, caenorhabditis elegans, circadian rhythms, chronobiology, Transcriptomics, splicing, alternative splicing, R, photobiology, plant architecture, leaf development
Tools: Molecular Biology, Molecular biology techniques (RNA/DNA/Protein), R, Systems Biology, Transcriptomics, Bioinformatics, Databases, Genetics, Plant biology, C. elegans biology
Roles
Project administrator
- PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops
- Light and plant development
- Light control of leaf development
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- PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops
- Light and plant development
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- PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops
- Light and plant development
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Related items
- Programmes (3)
- Projects (3)
- Institutions (1)
- Investigations (0+2)
- Studies (0+2)
- Assays (0+1)
- Data files (0+4)
- Models (0+1)
- Publications (4)
Plant development is strongly influenced by external light cues, yet we know very little of how this is mediated at a molecular level. This BBSRC funded project seeks to determine how phytochrome light receptor signalling connects with the developmental pathways to control plant architecture.
Projects: Light and plant development
Web page: http://hallidaylab.bio.ed.ac.uk
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
My lab studies how plants sense and respond to their environment. We specialise in signal integration. Learn more about what we do by exploring the web pages.
Projects: Light control of leaf development
Web page: http://hallidaylab.bio.ed.ac.uk/
For plants, light is a signal that carries information about the environment, and a source of energy for photosynthesis. PHYTOCAL focuses on the interaction between phytochrome signalling and photosynthesis, and seeks to understand fundamental processes that make carbon (C) and nitrogen (N) resources available for plant growth. These unexplored connections underlie biomass production and plasticity, which contribute significantly to yield variability in the field.
Programme: SynthSys
Public web page: http://hallidaylab.bio.ed.ac.uk/node/1
Organisms: Arabidopsis thaliana, Brassica rapa
This projects seeks to uncover how phytochrome signalling modulates leaf architecture
Organisms: Arabidopsis thaliana
How light control development
Programme: Modelling Light Control of Development
Public web page: Not specified
Start date: 1st Nov 2017
End date: 30th Nov 2021
Organisms: Arabidopsis thaliana
Abstract (Expand)
Authors: Deyue Yang, Daniel D. Seaton, Johanna Krahmer, Karen J. Halliday
Date Published: 5th Jul 2016
Publication Type: Not specified
Citation: Proc Natl Acad Sci USA 113(27) : 7667
Abstract (Expand)
Authors: A. A. Arsovski, J. E. Zemke, B. D. Haagen, S. H. Kim, J. L. Nemhauser
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 29514292
Citation: J Exp Bot. 2018 May 19;69(11):2837-2846. doi: 10.1093/jxb/ery080.
Abstract
Authors: J. Krahmer, A. Ganpudi, A. Abbas, A. Romanowski, K. J. Halliday
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 29254984
Citation: Plant Physiol. 2018 Feb;176(2):1039-1048. doi: 10.1104/pp.17.01437. Epub 2017 Dec 18.
Abstract (Expand)
Authors: V. Mengin, E. T. Pyl, T. Alexandre Moraes, R. Sulpice, N. Krohn, B. Encke, M. Stitt
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 28628949
Citation: Plant Cell Environ. 2017 Nov;40(11):2608-2627. doi: 10.1111/pce.13000. Epub 2017 Aug 17.