The FMv1 was constructed from 4 existing models, with Matlab and Simile versions.
SEEK ID: https://fairdomhub.org/studies/399
Arabidopsis Framework Model v1, predicting rosette growth with a multi-model ensemble
Projects: Millar group
Study position:
Export PNG
Creators
Additional credit
Jasper Taylor
Submitter
Views: 1798
Created: 22nd Aug 2018 at 10:30
This item has not yet been tagged.
Related items
Projects: Millar group, TiMet
Institutions: University of Edinburgh
https://orcid.org/0000-0002-9258-583XProjects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Institutions: University of Edinburgh
https://orcid.org/0000-0003-1756-3654Projects: Systo models, PlaSMo model repository, Agro-ecological modelling
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
Andrew Millar's research group, University of Edinburgh
Programme: SynthSys
Public web page: http://www.amillar.org
Organisms: Escherichia coli, Arabidopsis thaliana, Ostreococcus tauri
Data, models and simulations for the Chew et al. 2014 paper (PNAS, https://doi.org/10.1073/pnas.1410238111), using wild-type Arabidopsis ecotype Col-0 in standard 12hL:12hD growth conditions, compared to La(er) or Fei-0 accessions, or to plants overexpressing a micro RNA (miR156).
Submitter: Andrew Millar
Studies: Construction of Framework Model v1, Test of FMv1, growth study of Col-0 accession in 12L:12D, Test of FMv1, growth study of Col-0 accession in 5 photoperiods, Test of FMv1, growth study of other accessions and transgenic line in 12...
Assays: Arabidopsis Framework Model v1, Matlab and Simile version, Gas exchange of Fei-0 and Ler plants in 12hL:12hD, Growth of Col-0 and 35S:miR156 plants in 12hL:12hD, Growth of Col-0 in 12hL:12hD, Growth of Col-0 plants in 5 photoperiods, Growth of Fei-0 and Ler plants in 12hL:12hD
Snapshots: No snapshots
In future we should split these versions into separate Assays, and link to the four, original component models, when they are imported with the PlaSMo resource into FairdomHub (expected late 2018)
Submitter: Andrew Millar
Biological problem addressed: Model Analysis Type
Investigation: Arabidopsis Framework Model v1, predicting rose...
Organisms: No organisms
Models: Chew_et_al_2014_Framework_Model version 1, Matl...
SOPs: No SOPs
Data files: Supplementary Information on FMv1 model
Snapshots: No snapshots
Supplementary information file from Chew et al. PNAS 2014, including full model description for Arabidopsis Framework Model v1, model simulations and experimental validations.
Creators: Andrew Millar, Yin Hoon Chew
Submitter: Andrew Millar
Investigations: Arabidopsis Framework Model v1, predicting rose...
Studies: Construction of Framework Model v1
This record includes Matlab and Simile format versions of the Arabidopsis Framework Model version 1, FMv1 (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111), copied from the PlaSMo resource (www.plasmo.ed.ac.uk), PLM_ID=76. The model description is in the Supplementary Materials of the publication, which should be uploaded somewhere here also but I don't see how to do it.
The FMv1 links the following sub-models:
- Arabidopsis leaf carbohydrate model (Rasse and ...
Creators: Andrew Millar, Yin Hoon Chew
Submitter: Andrew Millar
Model type: Not specified
Model format: Matlab package
Environment: Matlab
Organism: Arabidopsis thaliana
Investigations: Arabidopsis Framework Model v1, predicting rose..., Prediction and analysis of phenotypes in the Ar... and 1 hidden item
Studies: Construction of Framework Model v1, Construction of Framework Model version 2 (FMv2) and 1 hidden item
Assays: Arabidopsis Framework Model v1, Matlab and Simi..., Composition of FMv2 and 1 hidden item