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What is PlaSMo?
PlaSMo stands for Plant Systems-biology Modelling
Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost
To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML
To evaluate the behaviour
EU FP7 collaborative project TiMet, award number 245143. Funded 2010-2015.
"TiMet assembles world leaders in experimental and theoretical plant systems biology to advance understanding of the regulatory interactions between the circadian clock and plant metabolism, and their emergent effects on whole-plant growth and productivity."
Data and Python scripts to run the analysis of literature data that estimates rates of protein synthesis in the light and dark, and overall rates of protein turnover, in Cyanothece and Ostrecoccus tauri.
Investigation: Photoperiodic control of the Arabidopsis proteo...
Organisms: Ostreococcus tauri
SOPs: No SOPs
Data files: Aryal et al, 2011, metabolic labelling of Cyano..., Calculated rates of protein degradation in Cyan..., Calculated rates of protein degradation in Ostr..., Calculated rates of protein synthesis in the li..., Calculated rates of protein synthesis in the li..., Martin et al, 2012, Ostreococcus N15 labelling ...