Light and circadian regulation of clock components aids flexible responses to environmental signals
Dixon et al. (2014)
DOI: 10.1111/nph.12853
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Projects: Millar group, BioDare1
Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh
https://orcid.org/0000-0002-1352-7245
Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering
Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses
Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Organisms: Not specified
Collection of experiments created by Dixon Laura on the original BioDare and automatically transferred to FAIRDOM Hub.
Snapshots: No snapshots
SDtoLD 260410
| Property | Value |
|---|---|
| BioDare ID | 13982031569136 |
| Author | Laura Dixon |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
pTOC plate 0683 pCAB plate0684 LHY plate 0685 control plate 0686 TOC plate0687 pLHY plate 0688
Purpose
Re-entrainment dynamics during the transition between light:dark cycles with different photoperiods, comparing Arabidopsis thaliana and Ostreococcus tauri. This expt in O. tauri ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Dixon Laura
Study: Dixon et al. (2014)
Organisms: Ostreococcus tauri
SOPs: No SOPs
Data files: BioDare_metadata, LHY 0685 normalised, Ot data summary for BioDare 2014 v3.1, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list, TOC normalised, control plate 0686Derandomized, pCAB plate0684Derandomized, pLHY normalised, pTOC 0683 normalised, summary
Snapshots: No snapshots
030810H3 SD-LD
| Property | Value |
|---|---|
| BioDare ID | 13982027442235 |
| Author | Sarah Hodge |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Plants entrained in 8L:16D (120umol m-2s-1) for 7 days. Experimental Conditions: 2 days 8L:16D, 4 days 16L:8D (red and blue light 60umolm-2s-1)
Purpose
Re-entrainment dynamics during transition between light:dark cycles with different photoperiods, comparing Arabidopsis thaliana and ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Dixon Laura
Study: Dixon et al. (2014)
Organisms: Arabidopsis thaliana
SOPs: No SOPs
Data files: 030810H3 NE6R SD-LD, 030810H3 SD-LD.1, BioDare_metadata, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list
Snapshots: No snapshots
030810H3 NE6R SD-LD (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
STANDARD_DATAFILE.2 (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE.2 (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
030810H3 SD-LD.1 (from BioDare)
Creator: Sarah Hodge
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Sarah Hodge
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Sarah Hodge
Submitter: Daniel Thedie
Readme file
Creator: Sarah Hodge
Submitter: Daniel Thedie
summary (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
TOC normalised (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
pTOC 0683 normalised (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
pLHY normalised (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
pCAB plate0684Derandomized (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
LHY 0685 normalised (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
control plate 0686Derandomized (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
STANDARD_DATAFILE.2 (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE.2 (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
Ot data summary for BioDare 2014 v3.1 (from BioDare)
Creator: Laura Dixon
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Laura Dixon
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Laura Dixon
Submitter: Daniel Thedie
Readme file
Creator: Laura Dixon
Submitter: Daniel Thedie
Abstract (Expand)
Authors: Laura E. Dixon, Sarah K. Hodge, Gerben van Ooijen, Carl Troein, Ozgur E. Akman, Andrew J. Millar
Date Published: 20th May 2014
Publication Type: Journal Article
DOI: 10.1111/nph.12853
Citation: New Phytologist 203(2):568-577.
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