Projects: COMBINE Multicellular Modelling
Institutions: Indiana University Bloomington
https://orcid.org/0000-0003-3634-190XExpertise: Computational Biology, Mathematical modelling, Multicellular Modelling, Compucell3D, Virtual Tissues, Model Sharing, Language Standards, Agent-based modelling, Dynamic modelling, Computational Systems Biology, standards, Developmental Biology, Toxicology, Framework Development, Cancer, Immunology, Community Building
Tools: Compucell3D, Antimony, tellurium, SBML, CC3DML
Dr. Glazier’s research focuses on early embryonic development, developmental and chronic toxicity and disease, with more than 100 experimental and computational papers on biological development and developmental diseases (including polycystic kidney disease (ADPKD), tumor growth and vascularization, Age Related Macular Degeneration and diabetic retinopathies, somitogenesis and liver toxicity) and more recently on modeling in-host viral infection and immune response. As part of his work on infection ...
Projects: COVID-19 Disease Map
Institutions: Barcelona Supercomputing Center
https://orcid.org/0000-0002-7696-1241I completed my BSc in Biology and MSc in Cell Biology by the University of Valencia. During my last undergrad year I participated in synthetic biology’s iGEM competition where I dove in the use of models in Biology, which pushed me to pursue a PhD in the Department of Applied Mathematics in the Technical University of Valencia.
My research on Metabolic Engineering of hydrogen in cyanobacteria led me to be visiting researcher at Uppsala University, Denmark Technical University and EMBL Heidelberg. ...
Projects: COMBINE Multicellular Modelling
Institutions: Indiana University Bloomington
https://orcid.org/0000-0002-5901-1404I am a multicell and multiscale modeler and member of the Biocomplexity group at Indiana University. The group produces and maintains the multicellular modelling package Compucell3D. I am also a voting member of the USA committee to the International Organization for Standards (ISO) working group on standards in biotechnology and the chairman of a sub-sub group on publishing standards.
Projects: MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, WURSynBio
Institutions: Wageningen University & Research
https://orcid.org/0000-0001-7049-5334Expertise: Bioinformatics, Systems Biology, Agent-based modelling, Dynamic modelling, Python, Java, R, pathogen host interaction, Molecular Biology
Tools: Copasi, libRoadrunner, Python, R, semantic web
I am a researcher (PhD student) working at Wageningen University & Research as bioinformatician and modeller. I am working as part of the MycoSynVac (http://www.mycosynvac.eu/) project on dynamic modelling of central carbon metabolism in M. pneumoniae, to be extended to full dynamic modelling of metabolism to be implemented in a whole cell model. I am also looking into possibilities to improve standards in model generation using semantic technologies, improving automatic generation, annotation ...
Postdoctoral researcher at Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg
Lutz Brusch is heading the research group "Spatio-temporal pattern formation in cells and tissues" at the Centre for Information Services and High Performance Computing of TU Dresden, Germany. The group is co-developing the multi-cellular modelling and simulation framework Morpheus (https://morpheus.gitlab.io) and is collaborating with experimental labs on questions of tissue morphogenesis and regeneration.
Projects: SUMO
Institutions: University of Sheffield
Expertise: Bioinformatics, Agent-based modelling, Microarray Data Analysis
Tools: Java, Copasi, Taverna, Bioconductor Packages in R
I am a research associate in the department of computer science at the University of Sheffield since January 2008. My research is primarily involved with using agent-based modelling techniques and mathematical modelling techniques to model Escherichia coli K-12 Respiratory Adaptation. My research interests also include, development of workflows to analyze Microarray Data.
Projects: SUMO
Institutions: University of Sheffield
Professor of Computer Science, University of Sheffield. FBCS, FIMA, CEng, C.Math, CITP. I have been involved in the use of computational techniques for modelling biological systems since 1980. More recently I have developed a technique of agent-based modelling based on the framework FLAME which is the only such system that can be run on supercomputers. We have made significant new biological discoveries using this approach: The approach models the location and activity of millions of individual ...