Genome scale metabolic model of Sulfolobus solfataricus specific scenario: modelling of L-fucose degradation pathways
Submitter: Jacqueline Wolf
Biological problem addressed: Metabolic Network
Investigation: L-fucose degradation in Sulfolobus solfataricus P2
Organisms: Sulfolobus solfataricus
Models: Metabolic model of Sulfolobus solfataricus
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
The new GEM of S. coelicolor developed by Tjasa Kumelj, Snorre Sulheim, Alexander Wentzel and Eivind Almaas in 2017/2018
Creators: Snorre Sulheim, Tjasa Kumelj
Submitter: Snorre Sulheim
Model type: Stoichiometric model
Model format: SBML
Environment: Not specified
Organism: Streptomyces coelicolor
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Metabolic model of Sulfolobus solfataricus P2 in the SBML (xml) and metano (txt, sce, fba) format. Scenarios are specific for growth on D-glucose or L-fucose as sole carbon source. Different theoretical routes of L-fucose degradation were modeled (E. coli-like, Xanthomonas-like and lactaldehyde-forming). Highest overall agreement between the model and experimental data was observed for the lactaldehyde-forming route.
Creators: Jacqueline Wolf, Helge Stark, Dietmar Schomburg
Submitter: Jacqueline Wolf
Model type: Metabolic network
Model format: SBML
Environment: Not specified
Organism: Sulfolobus solfataricus
Investigations: L-fucose degradation in Sulfolobus solfataricus P2
Abstract (Expand)
Author: M. Bekaert
Date Published: 14th Nov 2012
Publication Type: Not specified
PubMed ID: 23166792
Citation: PLoS One. 2012;7(11):e49903. doi: 10.1371/journal.pone.0049903. Epub 2012 Nov 14.