Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem
Institutions: University of Edinburgh

Disciplines: Experimentalist, Modeller
Roles: Project Coordinator, Vice Coordinator
Expertise: Data Management, Molecular Biology, Genetics, Deterministic modelling of gene regulation networks, Systems Biology, circadian rhythms, arabidopsis thaliana, Mathematical modelling
Tools: Deterministic models, Stochastic models, SBML, Transcriptomics, Proteomics
Institutions: University of Edinburgh

Disciplines: Experimentalist
Roles: Postdoc
Expertise: arabidopsis thaliana, caenorhabditis elegans, circadian rhythms, chronobiology, Transcriptomics, splicing, alternative splicing, R, photobiology, plant architecture, leaf development
Tools: C. elegans biology, Molecular Biology, Molecular biology techniques (RNA/DNA/Protein), R, Systems Biology, Transcriptomics, Bioinformatics, Databases, Genetics, Plant biology
Projects: DigiSal, GenoSysFat, SAFE-Aqua
Institutions: Wageningen University & Research

Disciplines: Bioinformatician
Roles: PhD Student
Expertise: semantics, Software Engineering, R, Python, Java, Data Management, Databases, Genetics, Genomics, Microbiology
Tools: Not specified
Projects: BioZEment 2.0, BESTER
Institutions: SINTEF
Disciplines: Not specified
Roles: Not specified
Expertise: Molecular Biology, Molecular microbiology, Microbiology, Genetics, Genomics
Tools: Biochemistry and protein analysis, Metabolic Engineering, Molecular Biology, Microbiology, Biochemistry, Genetic modification
Disciplines: Experimentalist
Roles: Postdoc
Expertise: Molecular Biology, Metabolic Engineering, Saccharomyces cerevisiae, Genetics
Tools: Genetics, Metabolic Engineering, Molecular Biology, Fermentation, Genetic modification
Projects: SYSTERACT
Institutions: University of Tübingen
Disciplines: Experimentalist
Roles: Not specified
Expertise: Not specified
Tools: Molecular Biology, Microbiology, Genetics, Genetic modification, Fermentation, Molecular biology techniques (RNA/DNA/Protein), Biochemistry
Projects: SYSTERACT
Institutions: University of Tübingen
Disciplines: Not specified
Roles: Not specified
Expertise: Microbiology, Molecular Biology, Genetics, Transcriptomics, Metabolic Engineering, nitrogen metabolism, Streptomyces coelicolor, Actinobacteria, antibiotic production
Tools: Fermentation, Genetic modification, Molecular biology techniques (RNA/DNA/Protein), Proteomics, Transcriptomics, Biochemistry and protein analysis
Projects: HUMET Startup
Institutions: Leiden University Medical Center

Disciplines: Not specified
Roles: Not specified
Expertise: Genetics, pathology of type 2 diabetes and cardiovascualr disease
Tools: GWAS, Metabolomics, Transcriptomics, WES/WGS, mouse models, patient interventions
Professor in genetics and systems biology of the metabolic syndrome
Disciplines: Not specified
Roles: Postdoc
Expertise: Genetics, Microbiology, Metabolic Engineering
Tools: antiSMASH, CloneManager, artemis
Projects: HUMET Startup
Institutions: Centro de Investigación Príncipe Felipe

Disciplines: Bioinformatician, Modeller
Roles: Not specified
Expertise: Bioinformatics, Data Management, Data integration, Mathematical modelling, Genomics, Genetics, Transcriptomics, Systems Biology, Microarray analysis
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Genetics, Genomics, R, Systems Biology, Transcriptomics, Java
My scientific interests revolve around functional genomics, systems biology and the development of algorithms and software for the analysis of high-throughput data (mainly, but not restricted to, Next Generation Sequencing) and its application to the relationship between genotype and phenotype, mainly oriented to personalized and precision medicine. I am especially interested in the study of disease mechanisms and drug action mechanisms, drug repositioning and the definition of mechanism-based
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Projects: GenoSysFat, DigiSal
Institutions: Norwegian University of Life Sciences

Disciplines: Experimentalist
Roles: Technician
Expertise: Molecular Biology, Microbiology, Genetics
Tools: Molecular Biology, Molecular biology techniques (RNA/DNA/Protein), Genetics, Microbiology
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Bioinformatics
Tools: Bioinformatics, Genetics, Transcriptomics, Molecular Biology
Projects: MetApp
Institutions: ETH Zurich
Disciplines: Experimentalist
Roles: PhD Student
Expertise: carbon metabolism, Genetics, Biochemistry, Microbiology
Tools: Biochemistry, Genetics, Molecular Biology
Disciplines: Not specified
Roles: Not specified
Expertise: Molecular microbiology, Molecular Biology, Genomics, Genetics, Systems Biology, functional protein expression
Tools: Molecular biology techniques (RNA/DNA/Protein), Genetic modification, Biochemistry and protein analysis, Genetics
Research scientist
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: University of Tokyo
Disciplines: Modeller, Experimentalist, Bioinformatician
Roles: Postdoc
Expertise: Genetic interaction, Cell biology, Image analysis, Phenome, Genetics, Genomics
Tools: Model selection, Fluorescence microscopy, CalMorph, R, Java, GLM
I am a postdoc in The University of Tokyo. My research interest is to know structure of biological systems by functional relationships between genes working in response to endogenous and/or exogenous disruptions. I'm trying to find functional relationships between genes by similarity of phenotype defined with high-dimensional morphological features in yeast gene deletion collection. I'm happy if you will talk with me in any topics.
Projects: SulfoSys - Biotec
Institutions: University Duisburg-Essen
Disciplines: Not specified
Roles: Not specified
Expertise: Genetics, Carbohydrate Metabolism of Archaea carbon metabolism, Biochemistry
Tools: Molecular biology techniques (RNA/DNA/Protein), Enzyme assays Molecular Biology, Biochemistry
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, ZucAt, SysMO-LAB, Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, ErasysApp Funders, Glycon proposal preparation, Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, Multiscale modelling of state transitions in the host-microbiome-brain network, BESTER
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), FAIRDOM User meeting, Norwegian University of Science and Technology

Disciplines: Experimentalist, Bioinformatician, Admin
Roles: Not specified
Expertise: semantics, data modelling, curation, ontology, Transcriptomics, Data Management, Bioinformatics, Molecular Biology, Genetics
Tools: RightField, Protege, seek, BioMart, Chip-chip, Databases, Cell and tissue culture
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project
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Projects: SulfoSys
Institutions: Wageningen University & Research
Projects: BaCell-SysMO
Institutions: University of Greifswald
Disciplines: Experimentalist
Roles: Postdoc
Expertise: Bacillus subtilis, Proteomics, Transcriptomics, Bioinformatics, Genetics, Molecular Biology, Biochemistry, Microbiology
Tools: Microarray analysis, Proteomics, Transcriptomics, Genetic modification
I started to work with B. subtilis during my diploma thesis in Marburg, analyzing the gene expression pattern during sporulation and their control by the four sporulation sigma factors. This work was continued during my PhD thesis in Greifswald. In collaboration with Prof. Bremer and Prof. Marahiel in Marburg we also studied additional adaptation processes of B. subtilis, like the adaptation to low temperatur and high osmolarity.
I am now working as a staff scientist in Prof. Völkers lab in
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Projects: KOSMOBAC
Institutions: Ludwig-Maximilians University of Munich
Disciplines: Not specified
Roles: Not specified
Expertise: Molecular Biology, Genetics, Biochemistry, Microbiology
Tools: qPCR, Northern analyses), Proteomics (2D-PAGE), mutant strain generation, Fluorecence based reporter gene analyses/single cell analyses, Protein chemical methods (protein overproduction, purification, enzymatic analyses, quantitative Western analyses), molecular biological techniques (RNA/DNA techniques
I am research assistant in the microbiology department at the Ludwig-Maximilians Universität in Munich (München), working at the chair of Prof. Kirsten Jung. In our SysMO consortium we generate biological data and work in close cooperation with the workgroup of Dr. Andreas Kremling of the Max-Planck-Institut für Dynamik komplexer technischer Systeme in Magdeburg who performs mathematical modeling. The topic of our workpackage deals with "K+ homeostasis in Escherichia coli", wherby the K+ transporters,
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Projects: COSMIC
Institutions: University of Nottingham
Disciplines: Not specified
Roles: Not specified
Expertise: Synthetic Biology, Systems Biology, Molecular Biology, Genetics, Microbiology
Tools: Genetic analysis, Genetic modification
I'm an 'experimentalist' (molecular microbiologist) Postdoc working on regulation and peptide signaling in Clostridium acetobutylicum.
I'm also a SysMO-DB PAL (Product Application Liason) for COSMIC, working on data management including standards and integration with SysMO SEEK.
Projects: BaCell-SysMO
Institutions: University of Groningen
Disciplines: Not specified
Roles: Not specified
Expertise: protein secretion, C- and N- metabolism, gene regulation, stress responses, pathogens, virulence factors, metal ion homeostasis, Gram positive bacteria (Bacillus, Lactococcus, Streptococcus), competence, sporulation, germination, antimicrobial peptides, phenotypic heterogeneity, bistability
Tools: genomic array footprinting, time lapse microscopy, FACS, Transcriptomics, Genomics, Bioinformatics, Molecular Biology, Genetics, Biochemistry
Group leader Molecular Genetics
Projects: KOSMOBAC
Institutions: University of Aberdeen
Disciplines: Not specified
Roles: Not specified
Expertise: Recombineering, Chip-chip
Tools: Enzyme assay, Chip-chip, Genomics, Molecular Biology, Genetics
I am final year PhD student in Prof Ian Booth's lab and a microbiologist by trade. I am interested in how enteric bacteria cope with stress and what systems they employ to increase their chances of survival, in particular upon methylglyoxal stress.
Projects: STREAM
Institutions: University of Warwick
Disciplines: Experimentalist
Roles: Not specified
Expertise: Molecular Biology, Genetics, Biochemistry, Microbiology
Tools: transcriptional analysis (Northern blots, Molecular biology techniques (RNA/DNA), quantitative western blot analyses, Proteomics (2D-PAGE), quantitative Western analyses), molecular biological techniques (RNA/DNA techniques, Fluorescence and confocal microscopy, PCR, Web services, Pharmacology and toxicology, Spectroscopy and structural analysis, Proteomics, Genetics
Postdoctoral Research fellow with experience in Genomics, transcriptomics, proteomics and metabolomics
Projects: BaCell-SysMO
Institutions: University of Groningen
Disciplines: Not specified
Roles: Not specified
Expertise: Systems Biology, regulation of gene expression, Signal transduction in Gram-negative bacteria; Synthetic Microbiology; Single cell gene expression; Regulatory networks; biochemistry; histidine ki..., gene regulation, stress responses, sporulation, phenotypic heterogeneity, bistability, translational control of gene expression, Bacillus subtilis, Molecular Biology, Genetics, Microbiology
Tools: Time-lapse fluorescence microscopy Flow cytometry, Molecular biology techniques (RNA/DNA), time lapse microscopy, Fluorecence based reporter gene analyses/single cell analyses, PCR, Model organisms, Single Cell analysis, Genetic analysis, Genetic modification, Molecular Biology, Genetics, Microbiology
Projects: BaCell-SysMO
Institutions: University of Goettingen
Disciplines: Not specified
Roles: Not specified
Expertise: protein-protein interactions, Mycoplasma pneumoniae, Cell physiology, protein-RNA interactions, regulation of gene expression, Bacillus subtilis, Molecular Biology, Genetics, Microbiology
Tools: SubtiWiki, SPINE, bacterial two-hybrid system, Chemical cross-linking, Proteomics (2D-PAGE), mutant strain generation, Genetic analysis, Genetic modification, Biochemistry and protein analysis, Molecular Biology, Microbiology
Projects: BaCell-SysMO
Institutions: University of Groningen
Disciplines: Not specified
Roles: Not specified
Expertise: microscopy, fluorescence protein fusions (transcriptional and translational), localisation studies, protein secretion, functional protein expression, gene regulation, stress responses, phenotypic heterogeneity, Bacillus subtilis, Microarray analysis, Molecular Biology, Genetics
Tools: DNA affinity chromatography, EMSA, Molecular biology techniques (RNA/DNA/Protein), transposon mutagenesis, Fluorescence microscopy, Flow cytometry, Immunofluorescence, Site-directed mutagenesis, Fluorecence based reporter gene analyses/single cell analyses, Microarray analysis, Transcriptomics, Genetic modification
PhD student. Analyzing CcpA affinity to cre boxes (catabolite responsive elements) and response of B. subtilis to membrane protein overproduction stress.
Projects: SUMO
Institutions: Max Planck Institute for Dynamics of Complex Technical Systems
Disciplines: Not specified
Roles: Not specified
Expertise: Regulatory Networks, Molecular Biology, Genetics, Microbiology
I am interested in the coupling of global regulation and metabolism in E. coli. To analyze this I construct and analyze defined mutant strains. These strains are characterized in bioreactor experiments of different types (batch, conti, pulse ...) and measurements on the level of metabolites, mRNA, and protein are applied. For all projects there are cooperation partners that use the data in modeling approaches either from the MPI Magdeburg or from the SUMO consortium.
Projects: KOSMOBAC
Institutions: Ludwig-Maximilians University of Munich
Disciplines: Not specified
Roles: Not specified
Expertise: Molecular Biology, Genetics, Biochemistry, Microbiology
Tools: reporter gene analyses, spectroscopy, site-directed and random mutagenesis, plasmon resonance spectroscopy, molecular biological techniques (RNA/DNA techniques), Membrane protein biochemistry, Chromatography, Fermentation, Biochemistry and protein analysis, Genetics
I am a PhD student of the microbiology department at the Ludwig-Maximilians Universität München. I work at the chair of Prof. Kirsten Jung. The topic of our workpackage deals with "K+ homeostasis in Escherichia coli". In special I'm working on the sensor kinase KdpD that controls together with the response regulator KdpE the expression of the high-affinity K+ uptake system KdpFABC. The yet not fully understood molecular mechanism of stimulus perception and signal transduction is of particular
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Projects: PSYSMO
Institutions: University of Braunschweig
Disciplines: Not specified
Roles: Not specified
Expertise: Regulatory Networks, Bacterial metabolism | Metabolic engineering, Anaerobic Microbiology, Transcriptomics, Molecular Biology, Microbiology
Tools: Molecular biology techniques (RNA/DNA/Protein), qRT-PCR, time lapse microscopy, Proteomics (2D-PAGE), Microarray analysis, Genetic modification, Molecular Biology, Genetics
Projects: COSMIC
Institutions: Wageningen University & Research
Disciplines: Experimentalist
Roles: Not specified
Expertise: Clostridium, carbon metabolism, bacterial metabolism, Anaerobic Microbiology, Clostridial Genetics, Metabolic Engineering, Synthetic Biology, Systems Biology, Molecular Biology, Genetics, Microbiology
Tools: Molecular biology techniques (RNA/DNA/Protein), Chromatography, Molecular Biology, Microbiology
I'm an experimentalist 'Pre-doc' (I still have to finish my PhD thesis) and my work on the COSMIC project will focus on setting up a metabolomic analysis method for Clostridium acetobutylicum.
In the past I have worked on metabolic engineering of the same organism by disrupting genes to asses their impact on acid and solvent formation.
I'm looking forward to joining the COSMIC web-community. It hopefully will all us to stay in touch and update each other on advances in the (computer)lab.
Projects: SysMO-LAB
Institutions: University of Rostock
Disciplines: Experimentalist
Roles: Postdoc
Expertise: Genetic regulation, Molecular microbiology, Lactococcus, Streptococcus pyogenes, Transcriptomics, Molecular Biology, Genetics, Microbiology
Tools: Molecular biology techniques (RNA/DNA/Protein), Microarray analysis, Transcriptomics, Genetic modification, Molecular Biology, Genetics, Microbiology
Projects: Noisy-Strep
Institutions: University of Groningen
Disciplines: Experimentalist
Roles: Project Coordinator
Expertise: Medical microbiology, Streptococcus pneumoniae, Molecular microbiology, Bacterial Cell Biology, Bacillus subtilis, Single Cell analysis, Molecular Biology, Genetics, Microbiology
Tools: Molecular biology techniques (RNA/DNA/Protein), Fluorecence based reporter gene analyses/single cell analyses, Transcriptomics, Genetic modification, Genetics, Biochemistry, Microbiology
The Veening lab is interested in phenotypic bi-stability in Streptococcus pneumoniae and its importance in virulence of this human pathogen.
Projects: Noisy-Strep
Institutions: University of Groningen
Disciplines: Experimentalist
Roles: Postdoc
Expertise: Streptococcus pneumoniae, Molecular microbiology, Bacterial Cell Biology, Bacillus subtilis, Genetics, Microbiology
Tools: Molecular biology techniques (RNA/DNA/Protein), Fluorecence based reporter gene analyses/single cell analyses, Genetic modification, Microbiology