SEEK ID: https://fairdomhub.org/people/5
Location: Germany
ORCID: Not specified
Joined: 24th Apr 2009
Expertise: Microbiology, Genetics, Molecular Biology, Bacillus subtilis, regulation of gene expression, protein-protein interactions, Mycoplasma pneumoniae, Cell physiology, protein-RNA interactions
Tools: Microbiology, Molecular Biology, Biochemistry and protein analysis, Genetic analysis, Genetic modification, Proteomics (2D-PAGE), mutant strain generation, Chemical cross-linking, SubtiWiki, SPINE, bacterial two-hybrid system
Related items
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
BaCell-SysMO 2 Modelling carbon core metabolism in Bacillus subtilis – Exploring the contribution of protein complexes in core carbon and nitrogen metabolism.
Bacillus subtilis is a prime model organism for systems biology approaches because it is one of the most advanced models for functional genomics. Furthermore, comprehensive information on cell and molecular biology, physiology and genetics is available and the European Bacillus community (BACELL) has a well-established reputation for applying ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=53
Organisms: Bacillus subtilis
Submitter: Joerg Stuelke
Provider Name: Jörg Stülke's lab
Provider's strain ID: 168 trpC2
Organism: Bacillus subtilis
Genotypes: wild-type
Phenotypes: wild-type
Comment: laboratory wild type strain
Submitter: Joerg Stuelke
Provider Name: Jörg Stülke's lab
Provider's strain ID: GP287
Organism: Bacillus subtilis
Genotypes: deletion xylR;deletion crh;point mutation ptsH1
Phenotypes: wild-type
Comment: Not specified
Submitter: Joerg Stuelke
Provider Name: Jörg Stülke's lab
Provider's strain ID: GP289
Organism: Bacillus subtilis
Genotypes: deletion xylR;deletion hprK
Phenotypes: wild-type
Comment: Not specified
Submitter: Joerg Stuelke
Provider Name: Not specified
Provider's strain ID: GP270
Organism: Bacillus subtilis
Genotypes: mutation by insertion xylR
Phenotypes: wild-type
Comment: mutation by insertion xylR:: EmR
Submitter: Joerg Stuelke
Provider Name: Jörg Stülke's lab
Provider's strain ID: GP284
Organism: Bacillus subtilis
Genotypes: deletion xylR;point mutation ptsH1
Phenotypes: wild-type
Comment: Not specified
Submitter: Joerg Stuelke
Provider Name: Not specified
Provider's strain ID: GP297
Organism: Bacillus subtilis
Genotypes: deletion xylR;deletion crh
Phenotypes: wild-type
Comment: Not specified
Submitter: Joerg Stuelke
Provider Name: Jörg Stülke's lab
Provider's strain ID: GP198
Organism: Bacillus subtilis
Genotypes: del trp
Phenotypes: wild-type
Comment: Not specified
Submitter: Joerg Stuelke
Provider Name: Jörg Stülke's lab
Provider's strain ID: GP853
Organism: Bacillus subtilis
Genotypes: delition xylR ;delition ccpA
Phenotypes: wild-type
Comment: Not specified
Submitter: Joerg Stuelke
Provider Name: Not specified
Provider's strain ID: GP205
Organism: Bacillus subtilis
Genotypes: point mutation trpC2;fusion gltA-lacZ
Phenotypes: tryptohan auxotroph
Comment: Not specified
Table describing the catabolite repression of β-xylosidase by different carbon sources(glucose, sorbitol, fructose, maltose, glycerol. mannitol) in various mutants of CcpA cofactors (HprK, crh)
Creator: Joerg Stuelke
Submitter: Leif Steil
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Joerg Stuelke
Submitter: Leif Steil
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Recent studies revealed the unsuspected complexity of the bacterial transcriptome but its systematic analysis across many diverse conditions remains a challenge. Here we report the condition-dependent transcriptome of the prototype strain B. subtilis 168 across 104 conditions reflecting the bacterium's life-styles. This data set composed of 269 tiling array hybridizations allowed to observe ~85% of the annotated CDSs expressed in the higher 30% in at least one hybridization and thus provide an ...
Creators: Leif Steil, Ulrike Mäder, Colin Harwood, Rick Lewis, Ruben Mars, Priyanka Nannapaneni, Praveen kumar Sappa, Joerg Stuelke, Jan Maarten van Dijl, Michael Hecker, Uwe Voelker
Submitter: Leif Steil
Investigations: Redefining the Complete Transcriptome of Bacill...
Studies: Transcriptome analysis of glucose starvation in..., Transcriptome of continuously stressed B. subtilis, Transcriptome of shocked B. subtilis cells
Assays: Tiling Array analysis of glucose strarved B. su..., Tiling Array analysis of shocked B. subtilis cells, Tiling array analysis of continuous growth stre...
List of protein identified proteins in SPINE experiment.
Creators: Joerg Stuelke, Uwe Voelker
Submitter: Leif Steil
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Joerg Stuelke
Submitter: Leif Steil
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Joerg Stuelke, Rick Lewis, joseph newman
Submitter: Leif Steil
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Phosphorylation site of the HPr protein detected ba mass spectromety
Creators: Michael Hecker, Joerg Stuelke
Submitter: Leif Steil
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Ulrike Mäder, Joerg Stuelke, Praveen kumar Sappa, Martin Lehnik-Habrink, Marc Schaffer
Submitter: Praveen kumar Sappa
Abstract (Expand)
Authors: Martin Lehnik-Habrink, Leonie Rempeters, Akos T Kovács, Christoph Wrede, Claudia Baierlein, Heike Krebber, ,
Date Published: 24th Nov 2012
Publication Type: Not specified
PubMed ID: 23175651
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Date Published: 10th Nov 2012
Publication Type: Not specified
PubMed ID: 23136871
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Authors: Martin Lehnik-Habrink, , ,
Date Published: 8th May 2012
Publication Type: Not specified
PubMed ID: 22568516
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Authors: Pierre Nicolas, , Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, , Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, , Wolfram Liebermeister, Anika March, , , David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, , Franck Samson, Marc Schaffer, Benno Schwikowski, , , Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, , , , Philippe Bessières, Philippe Noirot
Date Published: 3rd Mar 2012
Publication Type: Not specified
PubMed ID: 22383849
Citation:
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Authors: Katrin Gunka, Stefan Tholen, Jan Gerwig, Christina Herzberg, , Fabian M Commichau
Date Published: 16th Dec 2011
Publication Type: Not specified
PubMed ID: 22178973
Citation:
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Authors: Jens J Landmann, Susanne Werner, , , Boris Görke
Date Published: 28th Nov 2011
Publication Type: Not specified
PubMed ID: 22092971
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Authors: , Arne G Schmeisky, ,
Date Published: 16th Nov 2011
Publication Type: Not specified
PubMed ID: 22096228
Citation:
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Authors: Frederik M Meyer, Matthieu Jules, Felix M P Mehne, Dominique Le Coq, Jens J Landmann, Boris Görke, Stéphane Aymerich,
Date Published: 14th Oct 2011
Publication Type: Not specified
PubMed ID: 22001508
Citation:
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Authors: Martin Lehnik-Habrink, Marc Schaffer, , Christine Diethmaier, Christina Herzberg,
Date Published: 4th Aug 2011
Publication Type: Not specified
PubMed ID: 21815947
Citation:
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Authors: Martin Lehnik-Habrink, , Fabian M Rothe, Alexandra S Solovyova, Cecilia Rodrigues, Christina Herzberg, Fabian M Commichau, ,
Date Published: 29th Jul 2011
Publication Type: Not specified
PubMed ID: 21803996
Citation:
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Authors: , Katrin Gunka, Rafael Polanía, Stefan Tholen,
Date Published: 11th Jan 2011
Publication Type: Not specified
PubMed ID: 21219666
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Abstract (Expand)
Authors: , Christoph R Lammers, Raphael Michna,
Date Published: 14th Oct 2010
Publication Type: Not specified
PubMed ID: 20947526
Citation:
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Authors: Frederik M Meyer, Jan Gerwig, Elke Hammer, Christina Herzberg, Fabian M Commichau, ,
Date Published: 20th Aug 2010
Publication Type: Not specified
PubMed ID: 20933603
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Authors: Nico Pietack, Dörte Becher, Sebastian R Schmidl, Milton H Saier, , Fabian M Commichau,
Date Published: 13th Apr 2010
Publication Type: Not specified
PubMed ID: 20389117
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Authors: Christoph R Lammers, , Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, ,
Date Published: 3rd Dec 2009
Publication Type: Not specified
PubMed ID: 19959575
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Authors: , Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers,
Date Published: 26th May 2009
Publication Type: Not specified
PubMed ID: 20157485
Citation:
Abstract (Expand)
Authors: Fabian M Commichau, Fabian M Rothe, Christina Herzberg, Eva Wagner, Daniel Hellwig, Martin Lehnik-Habrink, Elke Hammer, ,
Date Published: 3rd Feb 2009
Publication Type: Not specified
PubMed ID: 19193632
Citation:
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Authors: Kalpana D Singh, Matthias H Schmalisch, , Boris Görke
Date Published: 29th Aug 2008
Publication Type: Not specified
PubMed ID: 18757537
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Date Published: 17th Jul 2008
Publication Type: Not specified
PubMed ID: 18628769
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Authors: Fabian M Commichau, Katrin Gunka, Jens J Landmann,
Date Published: 7th Mar 2008
Publication Type: Not specified
PubMed ID: 18326565
Citation: