The main area of my expertise concerns protein sorting and secretion in Gram-positive bacteria, such as Bacillus subtilis and Staphylococcus aureus.
The Gram-positive bacterium B. subtilis is well known for its high capacity to secrete proteins into the extracellular milieu, which has led to its exploitation as a "cell factory" for secreted proteins. Nevertheless, the secretion of heterologous proteins of pharmaceutical importance is frequently inefficient. This applied problem has been a major incentive for fundamental research on the mechanisms of protein transport in B. subtilis. For this purpose, molecular biological, phylogenetic, genomic and proteomic techniques were employed in an integrated way to study the mechanisms of protein secretion in B. subtilis. More recently Systems Biological approaches were implemented for the research on protein secretion, including so-called live cell array technology. Important research outcomes were: (i) characterisation of a Gram-positive Tat pathway for protein transport; (ii) novel insights in the roles of lipid-modification in membrane-attachment and function of lipoproteins of Gram-positive bacteria; (iii) a strategy for improved disulphide bond formation in secreted proteins; (iv) description of the B. subtilis response to protein overproduction and secretion stress; and (v) bioinformatic and proteomic descriptions of the B. subtilis secretome. Ongoing research is focused on the dynamic behaviour of the secretome in response to changing environmental conditions.
Staphylococcus aureus is an important hospital- and community-acquired opportunistic pathogen. Recent research on protein sorting and secretion in S. aureus has yielded a state-of-the-art roadmap of the S. aureus secretome. The secretome map includes both protein transport pathways and the extracytoplasmic proteins. This has resulted in overviews of the exported virulence factors, pathways for protein transport, signals for cellular protein retention or secretion, and the exoproteomes of clinical S. aureus isolates. Importantly, the results include a first definition of the core and variant secretomes of S. aureus. While the core secretome seems to be largely employed for general house-keeping functions, necessary to thrive in particular niches provided by the human host, the variant secretome seems to contain the "gadgets" that S. aureus needs to conquer these well-protected niches (Sibbald et al., 2006). Ongoing research is aimed at analysing how the different secretion pathways of S. aureus impact on exoproteome biogenesis, fitness, resistance to antibiotics, adhesion to biomaterials and cell components, biofilm formation and virulence.
SEEK ID: https://fairdomhub.org/people/276
Location: Netherlands
ORCID: Not specified
Joined: 2nd Apr 2009
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SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
BaCell-SysMO 2 Modelling carbon core metabolism in Bacillus subtilis – Exploring the contribution of protein complexes in core carbon and nitrogen metabolism.
Bacillus subtilis is a prime model organism for systems biology approaches because it is one of the most advanced models for functional genomics. Furthermore, comprehensive information on cell and molecular biology, physiology and genetics is available and the European Bacillus community (BACELL) has a well-established reputation for applying ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=53
Organisms: Bacillus subtilis
Recent studies revealed the unsuspected complexity of the bacterial transcriptome but its systematic analysis across many diverse conditions remains a challenge. Here we report the condition-dependent transcriptome of the prototype strain B. subtilis 168 across 104 conditions reflecting the bacterium's life-styles. This data set composed of 269 tiling array hybridizations allowed to observe ~85% of the annotated CDSs expressed in the higher 30% in at least one hybridization and thus provide an ...
Creators: Leif Steil, Ulrike Mäder, Colin Harwood, Rick Lewis, Ruben Mars, Priyanka Nannapaneni, Praveen kumar Sappa, Joerg Stuelke, Jan Maarten van Dijl, Michael Hecker, Uwe Voelker
Submitter: Leif Steil
Investigations: Redefining the Complete Transcriptome of Bacill...
Studies: Transcriptome analysis of glucose starvation in..., Transcriptome of continuously stressed B. subtilis, Transcriptome of shocked B. subtilis cells
Assays: Tiling Array analysis of glucose strarved B. su..., Tiling Array analysis of shocked B. subtilis cells, Tiling array analysis of continuous growth stre...
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