Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, GenoSysFat, DigiSal, FAIRDOM user meeting, FAIRDOM Community Workers
Institutions: University of Manchester - Department of Computer Science, Manchester Centre for Integrative Systems Biology, University of Manchesterhttps://orcid.org/0000-0003-2130-0865
Expertise: Software Engineering, Data Management, Software Architecture, REST, Cloud computing, Agile development, Docker
Tools: Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, semantic web, AWS, Research Objects, Docker
Senior Research Software Engineer and Architect working within the FAIRDOM team.
Leads the development of FAIRDOM SEEK and RightField.
Projects: GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"
Institutions: University Medical Center Göttingenhttps://orcid.org/0000-0002-6307-3253
Expertise: Data Management, Databases, Health Informatics, Data Integration
Tools: R, Docker, linux, Data Management
Researcher at the University Medical Center Göttingen, Department of Medical Informatics
This section contains the links to the tools used for reproducing the computational results presented in U2019. This is required because SloppyCell is under the risk of becoming rotting code. Using Docker we can assure some persistence for the computational environment that allows to run SloppyCell.
The associated git repository can be found in https://github.com/jurquiza/Urquiza2019a.git which can be cloned.
The docker image can either be pulled from the docker hub site
docker pull ...
Submitter: Uriel Urquiza Garcia
Biological problem addressed: Model Analysis Type
Investigation: Absolute units in Arabidopsis clock models up t...
Organisms: No organisms
Models: No Models
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots