This section contains the links to the tools used for reproducing the computational results presented in U2019. This is required because SloppyCell is under the risk of becoming rotting code. Using Docker we can assure some persistence for the computational environment that allows to run SloppyCell.
The associated git repository can be found in https://github.com/jurquiza/Urquiza2019a.git which can be cloned.
The docker image can either be pulled from the docker hub site
docker pull uurquiza/urquiza2019a_tellurium_sloppycell:latest
or built by running the commd
docker build user/container:version
inside the git folder.
Then container can be started by running sh start.sh in a unix-like env. Window users will need to run the docker command on the terminal by making the adequate changes in the path syntax
SEEK ID: https://fairdomhub.org/assays/1224
Projects: Millar group
Investigation: Absolute units in Arabidopsis clock models up to U2020.3
Biological problem addressed: Model Analysis Type
Organisms: No organisms
Created: 7th Jan 2020 at 22:28
Last updated: 22nd Mar 2021 at 10:49