Projects: MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, WURSynBio
Institutions: Wageningen University & Research

Roles: PhD Student
Expertise: Molecular Biology, Bioinformatics, Dynamic modelling, R, Systems Biology, Python, pathogen host interaction, Agent-based modelling, Java
Tools: Copasi, R, libRoadrunner, semantic web, Python
I am a researcher (PhD student) working at Wageningen University & Research as bioinformatician and modeller. I am working as part of the MycoSynVac (http://www.mycosynvac.eu/) project on dynamic modelling of central carbon metabolism in M. pneumoniae, to be extended to full dynamic modelling of metabolism to be implemented in a whole cell model.
I am also looking into possibilities to improve standards in model generation using semantic technologies, improving automatic generation, annotation
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Projects: SysMO DB, FAIRDOM, FAIRDOM user meeting
Institutions: School of Computer Science, University of Manchester, Manchester Centre for Integrative Systems Biology, University of Manchester

Roles: Project Coordinator
Expertise: VREs, distributed systems, standards, semantics, Software Engineering
Tools: Web services, Ontologies, semantic web, web development, Workflows, Data Management
Professor of Computer Science University of Manchester
Co-Director of the FAIRDOM Initiative and co-leader of the SEEK4Science Platform Development
Deputy Head of Node ELIXIR-UK
Co-lead ELIXIR Interoperability Backbone Platform
Lead ISBE WP Data and Model Management
Data lead SynBioChem Manchester Synthetic Biology Research Centre for Fine and Speciality Chemicals
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, GenoSysFat, DigiSal, FAIRDOM user meeting, FAIRDOM Templates, FAIRDOM Community Workers
Institutions: School of Computer Science, University of Manchester, Manchester Centre for Integrative Systems Biology, University of Manchester

Expertise: Agile development, Cloud computing, REST, Software Architecture, Data Management, Software Engineering
Tools: Docker, Research Objects, AWS, semantic web, J2EE, linux, Ruby, Ruby on Rails, Taverna, Workflows, Web services, Java, Databases
Software Engineer and Architect working within the FAIRDOM team.
Leads the development of SEEK and RightField.
Projects: SysMO DB, HUMET Startup, FAIRDOM
Institutions: University of Leiden

Expertise: Data Management, Bioinformatics, Biochemistry
Tools: semantic web, Ontologies, Taverna, Workflows, Web services, Databases, Transcriptomics, Data Management
I am an Assistant Professor at Leiden University in the Leiden Institute of Advanced Computer Science. I am a bioinformatician and my research interests are in data integration. I use scientific workflows and semantic web technologies to integrate and analyse data in systems biology and functional genomics.
Abstract (Expand)
Authors: None
Date Published: 2013
Journal: The Semantic Web – ISWC 2013
DOI: 10.1007/978-3-642-41338-4_14
Citation:
Presentation by Carole Goble at the International Semantic Web Conference 2013 in Sydney Australia about the use of semantic web technology in SEEK and RightField.
Creators: Stuart Owen, Carole Goble, Katy Wolstencroft, Jacky Snoep, Wolfgang Müller, Olga Krebs, Quyen Nguyen
Contributor: Stuart Owen
An overview of the RDF work being done with SEEK, given at the PALs meeting, November 2012. It gives a high level explanation of what RDF is, why its useful and can be used for filtering and finding out information about the data in SEEK. This talk proceeded an interactive session where the PALs came up with 20 questions, to help us refine our model and prioritise what we describe.
Creator: Stuart Owen
Contributor: Stuart Owen
This talk was presented at the IEEE e-Science conference, Chicago, USA (8-12 October 2012).
http://www.ci.uchicago.edu/escience2012/
It describes the latest developments in RightField for both semantic data annotation and extraction to RDF.
Creators: Katy Wolstencroft, Stuart Owen, Carole Goble
Contributor: Katy Wolstencroft