Projects: COVID-19 Disease Map
Institutions: University Maastricht

Expertise: Knowledge integration, Curation, Data Integration, rare diseases, Systems Biology, GMP, GCP, Neuroscience
Tools: wikipathways, pathvisio, Cytoscape, R, Python, Statistics
Projects: COVID-19 Disease Map
Institutions: Pondicherry University

Expertise: Bioinformatics, Transcriptomics, Computational Systems Biology, Data analysis
Tools: Data Integration, R, Databases, Python, Cytoscape, network theory
PhD Student at Centre for Bioinformatics, Pondicherry University, Pondicherry, India.
Projects: COVID-19 Disease Map, Covid-19 Interferon pathway modelling and analysis
Institutions: University of Nebraska-Lincoln

Expertise: Computational modelling, Data analysis, Data Integration
Tools: R, Matlab, Cell designer, Cell Collective, Cytoscape
Projects: C19DM - Macrophage logical model, COVID-19 Disease Map
Institutions: Norwegian University of Science and Technology

Expertise: Systems Biology, Bioinformatics, Immunology, Molecular Biology
Tools: GINsim, Cytoscape, Computational and theoretical biology, Databases, data modeling
Projects: COVID-19 Disease Map
Institutions: University Maastricht

Expertise: Curation, Data Integration, Pathway Analysis, Network Visualization, Network biology
Tools: pathvisio, wikipathways, Cytoscape
Projects: COVID-19 Disease Map
Institutions: BIOASTER
Expertise: Network biology, Computational Systems Biology, Cancer research, Data analysis, Bioinformatics, Curation
Tools: CellDesigner, Cytoscape, NaviCell, Pathway Tools
Network biology, knowledge formalisation, cancer, data analysis
Projects: COVID-19 Disease Map
Institutions: Gladstone Institutes

Expertise: Network Visualization, Network Analysis, Pathway Curation, Pathway Analysis
Tools: wikipathways, Cytoscape, pathvisio
Bioinformatics core director at Gladstone Institutes. Executive director of the National Resource for Network Biology. Co-founder of WikiPathways. Co-developer of Cytoscape.
Projects: COVID-19 Disease Map
Institutions: Luxembourg Centre for Systems Biomedicine (LCSB)

Expertise: Biological knowledge managament, Systems Biology, Biocuration
Tools: CellDesigner, Cytoscape, Python, Shell scripting, NetworkX, Protein2GO
Projects: iRhythmics, OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation
Institutions: University of Rostock

Expertise: Bioinformatics, Transcriptomics, RNA-Seq, AI, Data Integration
Projects: Kinetics on the move - Workshop 2016, Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), FAIRDOM user meeting, COMBINE Multicellular Modelling, FAIRDOM & LiSyM & de.NBI Data Structuring Training
Institutions: Charité University Medicine Berlin, Humboldt-Universität zu Berlin, Humboldt University Berlin

We are investigating liver metabolism and function with the help of computational models and methods.
Group Leader Dr. Matthias König
Institute for Theoretical Biology Humboldt-University Berlin Philippstraße 13, 10115 Berlin, Germany phone +49 30 2093-98435 koenigmx@hu-berlin.de https://www.livermetabolism.com
The König group works on computational modeling, data science, data management, bioinformatics methods and machine learning on ...
Basic Graph statistics
RCM: Reaction-Compound Mapping, an edge between nodes means reaction contains metabolite MMM: Metabolite-Metabolite Mapping, an edge between nodes means these metabolites are reaction partners
_comp: entire network after removal of duplicated edges _del: taken from the entire network the largest connected subgraph after deletion of a set of nodes
betw: betweeness of nodes clos: closeness of nodes neigh: neighbours node_degree: number of edges per node path: shortest paths ...
Creator: Sebastian Curth
Submitter: Sebastian Curth
Investigations: Modular Model Building
Studies: Reactome Analysis
Assays: Graph Analysis, KEGG Data Mining
RCM: Reaction-Compound Mapping, an edge between nodes means reaction contains metabolite MMM: Metabolite-Metabolite Mapping, an edge between nodes means these metabolites are reaction partners
_comp: entire network after removal of duplicated edges _del: taken from the entire network the largest connected subgraph after deletion of a set of nodes _upload: entire network before removal of duplicated edges
X_depthY: subgraphs where X is a chosen central component and Y is the Yth of neighbour to ...
Creator: Sebastian Curth
Submitter: Sebastian Curth
Investigations: Modular Model Building
Studies: Reactome Analysis
Assays: Graph Analysis, KEGG Data Mining