Projects: COVID-19 Disease Map
Institutions: National Institute of Informatics
https://orcid.org/0000-0001-8725-3366Expertise: Bioinformatics, Computational Systems Biology, Curation, Data analysis, Systems Biology
Tools: SBML, Python, Matlab, Systems Biology, Bioinformatics
Projects: COVID-19 Disease Map
Institutions: University of Tübingen
https://orcid.org/0000-0002-0248-6679Projects: COVID-19 Disease Map
Institutions: University Maastricht
https://orcid.org/0000-0002-8416-4533Expertise: Pathway Analysis, Network Analysis, Curation
Tools: pathvisio
Projects: Not specified
Institutions: Not specified
Expertise: Cell biology, DNA repair, Cancer Biology, Cancer research, Molecular Biology, Curation, Cell physiology, Data analysis, Visualization, Graphical Editors, Image analysis
Tools: Animal models, Cell and tissue culture, In vivo bioluminescence imaging, Molecular biology techniques (RNA/DNA/Protein), Cytometry and fluorescent microscopy, Adobe Illustrator, GraphPad Prism, Adobe Photoshop
M.Sc. graduate specializing in medical science, translational cancer research, cell biology, and DNA damage repair.
Projects: COVID-19 Disease Map, C19DM-Neo4j
Institutions: Harvard Medical School
https://orcid.org/0000-0001-5709-371XExpertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Golestan University of Medical Sciences
https://orcid.org/0000-0002-0773-1610Expertise: Microbiology, Parameter estimation, Curation, Data Management, Databases
Tools: Microbiology, Data Management
I would like to collaborate on the COVID-19 projects. I am currently a faculty member of the Infectious Diseases research center, at the Golestan University of Medical Sciences, Iran, and studying clinical information of patients with COVID-19. I am a microbiologist and can help other teams to evaluate the data obtained from COVID-19 cases.
Expertise: Biochemistry, Cell biology, Data analysis, Dynamic modelling, Systems Biology, Image analysis, Genetics, Molecular Biology, R, SBML, Curation, Quantitative Biology, Physical Chemistry
Tools: Biochemistry and protein analysis, Bioinformatics, Systems Biology, SBML, R, ODE, Molecular biology techniques (RNA/DNA/Protein), Genetics, Dynamic modelling, Computational and theoretical biology, CellDesigner, Parameter estimation
Projects: COVID-19 Disease Map
Institutions: Ontario Institute for Cancer Research
Expertise: Visualisation, outreach, Curation, Analysis
Projects: COVID-19 Disease Map
Institutions: University of Bonn
Projects: COVID-19 Disease Map
Institutions: Oregon Health & Science University (OHSU)
Projects: COVID-19 Disease Map
Institutions: University of Pittsburgh
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: University Maastricht
https://orcid.org/0000-0002-7699-8191Expertise: Curation, Data Integration, Pathway Analysis, Network Visualization, Network biology
Tools: pathvisio, wikipathways, Cytoscape
Projects: COVID-19 Disease Map
Institutions: Guy's and St Thomas' NHS Foundation Trust and King's College London
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Edinburgh
Projects: COVID-19 Disease Map
Institutions: University Maastricht
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Gladstone Institutes
Expertise: Curation, Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Oregon Health & Science University (OHSU)
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: University of Pittsburgh
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: Università Cattolica del Sacro Cuore
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: German Center for Neurodegenerative Diseases (DZNE)
Projects: COVID-19 Disease Map
Institutions: University of Rostock
https://orcid.org/0000-0002-3470-3260Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: Morpho-Biomimicry research and innovation centre
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: University Maastricht
Expertise: Curation, Data Integration
Expertise: Curation
Tools: CellDesigner
Projects: COVID-19 Disease Map
Institutions: Indraprastha Institute of Information Technology Delhi
Expertise: outreach, Curation, Modeling, Data Integration
Projects: COVID-19 Disease Map
Institutions: Institut Pasteur
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: National Institute for Infectious Diseases "L.Spallanzani"
Expertise: Curation, Knowledge Management
Expertise: Curation
Tools: CellDesigner
Projects: COVID-19 Disease Map
Institutions: Sanofi R&D
Projects: Kinetics on the move - Workshop 2016, COVID-19 Disease Map
Institutions: Kinetics on the move Workshop at HITS, Luxembourg Centre for Systems Biomedicine (LCSB)
https://orcid.org/0000-0003-1473-370XExpertise: Data Management, Molecular Biology, Systems Biology, Curation
Tools: SBGN, CellDesigner, MIRIAM, SBML, Data Science
Scientific Project Manager at Luxembourg Centre for Systems Biomedicine, University of Luxembourg http://lcsb.uni.lu
Projects: COVID-19 Disease Map, ModeleXchange initiative
Institutions: The European Bioinformatics Institute < EMBL-EBI
Expertise: Knowledge integration, Curation
Projects: COVID-19 Disease Map
Institutions: Universität Konstanz
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: Biomathematica
Projects: COVID-19 Disease Map
Institutions: Estonian Genome Centre, Institute of Genomics, University of Tartu
Expertise: Genomics, Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: University of Tübingen
https://orcid.org/0000-0002-1240-5553Expertise: Systems Biology, Computational Systems Biology, Databases, Dynamic modelling, Java, Mathematical modelling, Metabolic Engineering, Disease Maps, Curation, Modeling, Data Integration, Constraint-based Modelling, Parameter estimation
Tools: SBML, SBGN, SBGNML, JSBML, Jupyter, Python, cobrapy toolbox, SBSCL, InSilico, Kinetic Modeling
Andreas Dräger is the assistant professor for Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens at the University of Tübingen in Germany. His group aims to combat the spreading antibiotics resistances by using mathematical modeling and computer simulation of bacterial systems up to entire microbiomes and host-pathogen interactions. In doing so, his group actively contributes to the advancement of various COMBINE standards.
Projects: COVID-19 Disease Map
Institutions: University of Lisbon
Expertise: Curation, Modeling, Validation
Projects: COVID-19 Disease Map
Institutions: University of Tübingen
https://orcid.org/0000-0003-3851-9978Expertise: Curation, Computational Systems Biology, Constraint-based Modelling, Systems Biology
Tools: SBML, Python, cobrapy toolbox, CellDesigner, libSBML, jupyter notebooks
Projects: COVID-19 Disease Map
Institutions: Barcelona Supercomputing Center
Expertise: Systems Biology, SBML, Java, Python, Machine Learning, Mathematical modelling, SBGN, Curation
Tools: CellDesigner, SBML, SBGN
Expertise: Network biology, Computational Systems Biology, Cancer research, Data analysis, Bioinformatics, Curation
Tools: CellDesigner, Cytoscape, NaviCell, Pathway Tools
Network biology, knowledge formalisation, cancer, data analysis
Projects: de.NBI-SysBio, Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, FAIRDOM, EnzymeML, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", FAIRDOM Community Workers, MIX-UP, COVID-19 Disease Map, ERNEST Mapping Group Pilot Study, NMTrypI - New Medicines for Trypanosomatidic Infections, Standardization of enzyme-catalyzed reaction measurement, Standardization of enzyme-catalyzed reaction modelling, ModeleXchange initiative, CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation, Mass spectrometry proteomics for biomarker discovery, Thymidylate synthase dimer dissociation, WG1 - Compound libraries coordination and integration of compound design, WG2 - Integration of early phase studies and low environmental impact actions, WG3 - Coordination of in vitro-to-in vivo translation of OneHealth leads and candidates, WG4 - Integration of R&D process-environmental studies and translation in informed whitepaper, WG5 - Promote dissemination, WG6 - Promote the transfer of knowledge, SABIO-VIS, SDBV/HITS
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
https://orcid.org/0000-0002-9077-5664Expertise: Biochemistry, Databases, Data Management, Curation
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, ZucAt, SysMO-LAB, Kinetics on the move - Workshop 2016, Example use cases, FAIRDOM user meeting, ErasysApp Funders, EraCoBiotech 2 nd call proposal preparation, Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW), FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME, Multiscale modelling of state transitions in the host-microbiome-brain network, BESTER, TRALAMINOL, Sustainable co-production, INDIE - Biotechnological production of sustainable indole, Extremophiles metabolsim, PoLiMeR - Polymers in the Liver: Metabolism and Regulation, OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation, NAD COMPARTMENTATION, HOTSOLUTE, Stress granules, FAIRDOM Community Workers, GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik", Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population, COVID-19 Disease Map, AquaHealth (ERA-BlueBio), LiSyM Core Infrastructure and Management (LiSyM-PD), Early Metabolic Injury (LiSyM-EMI - Pillar I), Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Modelling COVID-19 epidemics, SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation, SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke, CC-TOP, BioCreative VII, MESI-STRAT Review, SDBV/HITS, MESI-Review 2024
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), FAIRDOM User meeting, Norwegian University of Science and Technology, University of Rostock, University of Innsbruck
https://orcid.org/0000-0003-3540-0402Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics, semantics, Curation, Ontology, Data Modelling
Tools: Cell and tissue culture, Databases, Chip-chip, BioMart, Protege, RightField, SEEK
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In **[SySMO-DB ...
Projects: COVID-19 Disease Map
Institutions: University of Newcastle
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: US Environmental Protection Agency
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Barcelona Supercomputing Center
Projects: Not specified
Institutions: Not specified
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: Institut Pasteur
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: Centre for Research and Technology Hellas
Projects: COVID-19 Disease Map
Institutions: Institut Curie
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: University Medical Center Hamburg - Eppendorf Hamburg
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: Institut Pasteur
Expertise: Curation
Projects: COVID-19 Disease Map
Institutions: University of Western Australia
Expertise: Genomics, Curation, Data Integration
Projects: COVID-19 Disease Map, VHP project
Institutions: University Maastricht
Expertise: Curation, Data Integration
Projects: COVID-19 Disease Map
Institutions: National Institute for Infectious Diseases "L.Spallanzani"
Expertise: Curation, Knowledge Management
Projects: COVID-19 Disease Map
Institutions: National Institute for Infectious Diseases "L.Spallanzani"
Expertise: Knowledge integration, Curation
Projects: COVID-19 Disease Map
Institutions: University Maastricht
https://orcid.org/0000-0002-7770-620XExpertise: Knowledge integration, Curation, Data Integration, rare diseases, Systems Biology, GMP, GCP, Neuroscience
Tools: wikipathways, pathvisio, Cytoscape, R, Python, Statistics
Abstract (Expand)
Authors: , , Matthew Horridge, , , , ,
Date Published: 15th Jul 2011
Publication Type: Journal
PubMed ID: 21622664
Citation: Bioinformatics. 2011 Jul 15;27(14):2021-2. doi: 10.1093/bioinformatics/btr312. Epub 2011 May 26.
Abstract
Authors: Wolfgang Müller, Meik Bittkowski, Martin Golebiewski, Renate Kania, Maja Rey, Andreas Weidemann, Ulrike Wittig
Date Published: 1st Mar 2017
Publication Type: Journal
DOI: 10.1007/s13222-016-0243-4
Citation: Datenbank Spektrum 17(1):21-28
Abstract (Expand)
Authors: , , Matthew Horridge, Simon Jupp, , , , , Robert Stevens,
Date Published: 1st Feb 2013
Publication Type: Journal
DOI: 10.1002/cpe.2941
Citation: Concurrency Computat.: Pract. Exper. 25(4):467-480
Abstract (Expand)
Author: Vivien Marx
Date Published: 7th Jun 2012
Publication Type: Not specified
DOI: 10.1038/nbt.2243
Citation:
The Minimum Information about a Molecular Interaction Causal Statement to guide the curation of causal statements.
Creator: Vasundra Toure
Submitter: Vasundra Toure
Investigations: WP1: Creation of an integrated and curated canc...
Studies: Deliverable 1.1: Draft curation guidelines for ...
Assays: MI2CAST curation guidelines