The objectives of WP1 within the colosys project are:
- Produce resources of data and information that will be used for the identification of CC driver genes (WP2) and for the construction and configuration of computational models of cancer-related biological processes (WP2 and WP3)
- Integrate information from public patient data and cancer cell line data repositories with information from project specific clinical and model data
- Convert information from public cellular signalling databases and from text mining corpora into causal statements to be computationally combined into logical networks
SEEK ID: https://fairdomhub.org/investigations/184
Projects: Colosys
Investigation position:
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Created: 2nd Apr 2018 at 15:06
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Projects: Kinetics on the move - Workshop 2016, CausalDB, COMBINE Multicellular Modelling, Colosys, NTNU Health Druglogics
Institutions: Kinetics on the move Workshop at HITS, Norwegian University of Science and Technology
https://orcid.org/0000-0003-4639-4431Expertise: Bioinformatics, Systems Biology, SBGN standard
The DrugLogics initiative comprises a number of different subprojects, all geared towards the development of personalised medicine, or precision medicine
Projects: CausalDB, Colosys, Crossover Research 2.0, NTNU Health Druglogics
Web page: http://druglogics.eu/
The COLOSYS project aims to develop a deeper understanding of colon cancer networks and convert them into computer models with which it will be better to predict response to treatment. The combination of computational, experimental and clinical testing will provide understanding of drug resistance mechanisms, and allow personalised treatment of colon cancer.
Programme: Druglogics
Public web page: http://www.colosys.org/
Organisms: Homo sapiens
A repository of causal cellular signalling statement
Submitter: Vasundra Toure
Investigation: WP1: Creation of an integrated and curated canc...
Assays: Causal Extraction from Reactome
Snapshots: No snapshots
A guidelines for the curation of molecular interactions causal statements.
Submitter: Vasundra Toure
Investigation: WP1: Creation of an integrated and curated canc...
Assays: MI2CAST curation guidelines
Snapshots: No snapshots
Curation guidelines for molecular interaction causal statements
Submitter: Vasundra Toure
Assay type: Instructions
Technology type: Technology Type
Investigation: WP1: Creation of an integrated and curated canc...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Extraction of causalities from transcription and translation reactions from the Reactome pathway database.
Submitter: Vasundra Toure
Biological problem addressed: Biological Network Analysis
Investigation: WP1: Creation of an integrated and curated canc...
Organisms: No organisms
Models: No Models
SOPs: No SOPs
Data files: PSICQUIC registry
Snapshots: No snapshots
The causal interactions service provides the extracted data of causality from Reactome database.
Creator: Vasundra Toure
Submitter: Vasundra Toure
Investigations: WP1: Creation of an integrated and curated canc...
Studies: Deliverable 1.3: Causal cellular signalling sta...
Assays: Causal Extraction from Reactome
The Minimum Information about a Molecular Interaction Causal Statement to guide the curation of causal statements.
Creator: Vasundra Toure
Submitter: Vasundra Toure
Investigations: WP1: Creation of an integrated and curated canc...
Studies: Deliverable 1.1: Draft curation guidelines for ...
Assays: MI2CAST curation guidelines